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A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A merged read deduplication tool capable to perform merged read deduplication on single end data.
A method to improve mappings on circular genomes, using the BWA mapper
PR checklist for 2.0.0 (opening this on behalf of the smrnaseq team 🥳
Mostly so that we can all have a final round of review to get things done asap.
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