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Organizations

@nf-core

Pinned repositories

  1. EAGER-GUI

    The EAGER Pipeline

    Java 3 3

  2. EAGER-CLI

    The EAGER Command Line Component

    Java 3 1

  3. nf-core/eager

    A fully reproducible and state of the art ancient DNA analysis pipeline.

    Nextflow 8 7

  4. DeDup

    A merged read deduplication tool capable to perform merged read deduplication on single end data.

    Java 2

  5. BWA-Mismatches

    R 1

  6. CircularMapper

    A method to improve mappings on circular genomes, using the BWA mapper

    Java 1 1

1,788 contributions in the last year

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October 2018

Created a pull request in nf-core/tools that received 4 comments

Update channel order for environment yaml

This should address #160 by reversing the channel order of bioconda and conda-forge in the environment.yaml. PR checklist If you've fixed a bug o…

+4 −3 • 4 comments

Created an issue in nf-core/eager that received 9 comments

Genotyping / Downstream Analysis ideas

The former way to do things in EAGER1.X was to use GATK to call variants on the preprocessed / filtered BAM files and then use that to recreate e.g…

9 comments
1 contribution in private repositories Oct 11

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