diff --git a/package-lock.json b/package-lock.json
index 5ad99931e5..a510ab32f0 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -14187,6 +14187,7 @@
             "version": "3.0.0",
             "resolved": "https://registry.npmjs.org/hast-util-has-property/-/hast-util-has-property-3.0.0.tgz",
             "integrity": "sha512-MNilsvEKLFpV604hwfhVStK0usFY/QmM5zX16bo7EjnAEGofr5YyI37kzopBlZJkHD4t887i+q/C8/tr5Q94cA==",
+            "license": "MIT",
             "dependencies": {
                 "@types/hast": "^3.0.0"
             },
@@ -14199,6 +14200,7 @@
             "version": "3.0.1",
             "resolved": "https://registry.npmjs.org/hast-util-is-body-ok-link/-/hast-util-is-body-ok-link-3.0.1.tgz",
             "integrity": "sha512-0qpnzOBLztXHbHQenVB8uNuxTnm/QBFUOmdOSsEn7GnBtyY07+ENTWVFBAnXd/zEgd9/SUG3lRY7hSIBWRgGpQ==",
+            "license": "MIT",
             "dependencies": {
                 "@types/hast": "^3.0.0"
             },
@@ -14211,6 +14213,7 @@
             "version": "3.0.0",
             "resolved": "https://registry.npmjs.org/hast-util-is-element/-/hast-util-is-element-3.0.0.tgz",
             "integrity": "sha512-Val9mnv2IWpLbNPqc/pUem+a7Ipj2aHacCwgNfTiK0vJKl0LF+4Ba4+v1oPHFpf3bLYmreq0/l3Gud9S5OH42g==",
+            "license": "MIT",
             "dependencies": {
                 "@types/hast": "^3.0.0"
             },
@@ -14223,6 +14226,7 @@
             "version": "1.0.1",
             "resolved": "https://registry.npmjs.org/hast-util-minify-whitespace/-/hast-util-minify-whitespace-1.0.1.tgz",
             "integrity": "sha512-L96fPOVpnclQE0xzdWb/D12VT5FabA7SnZOUMtL1DbXmYiHJMXZvFkIZfiMmTCNJHUeO2K9UYNXoVyfz+QHuOw==",
+            "license": "MIT",
             "dependencies": {
                 "@types/hast": "^3.0.0",
                 "hast-util-embedded": "^3.0.0",
diff --git a/package.json b/package.json
index a4aa7ff682..64880109f7 100644
--- a/package.json
+++ b/package.json
@@ -41,7 +41,7 @@
         "lint:code": "eslint .",
         "lint:code:fix": "eslint . --fix",
         "postinstall": "patch-package",
-        "postbuild": "node ./scripts/joinLlmsFiles.mjs"
+        "postbuild": "node ./scripts/joinLlmsFiles.mjs && node ./scripts/indentLlmsFile.mjs"
     },
     "devDependencies": {
         "@apify/eslint-config": "^1.0.0",
diff --git a/scripts/indentLlmsFile.mjs b/scripts/indentLlmsFile.mjs
new file mode 100644
index 0000000000..6a527b1b86
--- /dev/null
+++ b/scripts/indentLlmsFile.mjs
@@ -0,0 +1,152 @@
+import fs from 'node:fs/promises';
+import path from 'node:path';
+
+const BUILD_DIR = path.resolve('build');
+const LLMS_FILE = path.join(BUILD_DIR, 'llms.txt');
+
+const INDENT_LEVEL = 2;
+
+const MAIN_SECTIONS = ['/api.md', '/api/v2.md'];
+
+const BASE_URL = process.env.APIFY_DOCS_ABSOLUTE_URL || 'https://docs.apify.com';
+
+/**
+ * Extracts the path from a URL, removing the base URL and query parameters
+ */
+function extractPathFromUrl(url) {
+    const urlObj = new URL(url);
+    return urlObj.pathname;
+}
+
+/**
+ * Calculates the hierarchical depth of a URL path.
+ * This counts directory levels, not including the filename.
+ */
+function getUrlHierarchyDepth(url) {
+    const urlPath = extractPathFromUrl(url);
+    const segments = urlPath.split('/').filter((segment) => segment && segment !== '');
+    const nonFileSegments = segments.filter((segment) => !segment.endsWith('.md'));
+
+    return nonFileSegments.length;
+}
+
+/**
+ * Determines if a URL is a main section page (level 0)
+ */
+function isMainSectionPage(url) {
+    const urlPath = extractPathFromUrl(url);
+    const segments = urlPath.split('/').filter((segment) => segment && segment !== '');
+
+    // Main pages are those with only one segment (the .md file)
+    if (segments.length === 1) {
+        return true;
+    }
+
+    // Special cases for main API pages
+    if (MAIN_SECTIONS.includes(urlPath)) {
+        return true;
+    }
+
+    return false;
+}
+
+/**
+ * Determines the indentation level for a documentation link based on its URL hierarchy.
+ */
+function getLinkIndentation(url) {
+    // Main section pages get no indentation
+    if (isMainSectionPage(url)) {
+        return 0;
+    }
+
+    const depth = getUrlHierarchyDepth(url);
+
+    // The first level after main sections gets 1 level of indentation
+    // Each subsequent level gets another level of indentation
+    return Math.min(depth * INDENT_LEVEL, INDENT_LEVEL * 4);
+}
+
+/**
+ * Determines the indentation level for a line based on its content type and URL.
+ */
+function getIndentationLevel(line, lineIndex, allLines) {
+    if (line.startsWith('# ') || line.startsWith('## ')) {
+        return 0;
+    }
+
+    if (line.startsWith('### ')) {
+        return INDENT_LEVEL;
+    }
+
+    if (line.startsWith('#### ')) {
+        return INDENT_LEVEL * 2;
+    }
+
+    // Handle markdown links with URLs
+    if (line.startsWith('- [') && line.includes(`](${BASE_URL}/`)) {
+        // Extract URL from markdown link format: - [Link Text](https://docs.apify.com/path/to/page)
+        // Example: "- [API Reference](https://docs.apify.com/api/v2)" → extracts "https://docs.apify.com/api/v2"
+        const urlMatch = line.match(new RegExp(`\\]\\((${BASE_URL.replace(/[.*+?^${}()|[\]\\]/g, '\\$&')}/[^)]+)\\)`));
+        if (!urlMatch) {
+            return INDENT_LEVEL;
+        }
+        return getLinkIndentation(urlMatch[1]);
+    }
+
+    // For other content, use the same indentation as the previous line
+    if (lineIndex > 0) {
+        const prevLine = allLines[lineIndex - 1];
+        const prevIndentMatch = prevLine.match(/^(\s*)/);
+        return prevIndentMatch ? prevIndentMatch[1].length : INDENT_LEVEL;
+    }
+
+    return INDENT_LEVEL;
+}
+
+/**
+ * Applies hierarchical indentation to content based on URL structure and content type.
+ */
+function indentContent(content) {
+    const lines = content.split('\n');
+    const indentedLines = [];
+
+    for (let i = 0; i < lines.length; i++) {
+        const line = lines[i];
+        const trimmedLine = line.trim();
+
+        // Preserve empty lines (add them without indentation)
+        if (!trimmedLine) {
+            indentedLines.push('');
+            continue;
+        }
+
+        const indent = getIndentationLevel(trimmedLine, i, lines);
+        const indentStr = ' '.repeat(indent);
+        indentedLines.push(indentStr + trimmedLine);
+    }
+
+    return indentedLines.join('\n');
+}
+
+/**
+ * Main function to indent the LLMs file.
+ * Reads the file, applies indentation, and writes it back.
+ */
+async function indentLlmsFile() {
+    try {
+        await fs.access(LLMS_FILE);
+        const content = await fs.readFile(LLMS_FILE, 'utf8');
+        const indentedContent = indentContent(content);
+        await fs.writeFile(LLMS_FILE, indentedContent, 'utf8');
+        console.log('Successfully indented llms.txt file');
+    } catch (error) {
+        if (error.code === 'ENOENT') {
+            console.log('llms.txt file not found, skipping indentation');
+        } else {
+            console.error('Error indenting llms.txt file:', error);
+            process.exit(1);
+        }
+    }
+}
+
+await indentLlmsFile();