Write log/error output from commands to stderr.

[jglogan]

• Closes [Bug]: Multiple commands output error information on stdout. #1631.
• The standard output should only contain result data, so that scripts consuming stdout don't need to scrape.

Type of Change

• Bug fix
• New feature
• Breaking change
• Documentation update

Motivation and Context

Logging/errors from commands list container system start should use the logger so that the messages go to stderr.

stdout should only receive output data (typically the affected resource ids)

Testing

• Tested locally
• Added/updated tests
• Added/updated docs

[github-actions]

Code Coverage

Tier	Line Coverage
Unit	34.64%
Integration	19.76%
Combined	53.78%