Skip to content




  • 1 discussion answered


Block or Report

Block or report armintoepfer

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

About me

I'm a bioinformatician with a computational biology PhD from ETH Zürich. Employed as full-time remote Principal Software Engineer at PacBio since 2014 and responsible for most of PacBio's analysis tools. May day-to-day business is working on sequence analysis algorithms using hardware-near C++, designing software architectures, tech-leading, and Agile stuff. You can get my attention if you work on specialized bioinformatics algorithms, software architectures, or bare metal.

You can find more info on, LinkedIn, or Twitter.

Get my public key curl | gpg --import

PacBio Tool Highlights

PhD Tool Highlights


  1. CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

    75 28

  2. pbsv - PacBio structural variant (SV) calling and analysis tools

    59 13

  3. Lima - Demultiplex Barcoded PacBio Samples

    R 43 19

  4. IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

    88 48

  5. Minor Variant Calling and Phasing Tools

    13 6

  6. PacBio Secondary Analysis Tools on Bioconda

    133 27

329 contributions in the last year

Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Oct Mon Wed Fri

Contribution activity

October 2021

Created 1 commit in 1 repository
3 contributions in private repositories Oct 4 – Oct 8

Seeing something unexpected? Take a look at the GitHub profile guide.