From 65ceb1f58e7c92633204c5b4817544df9d33c33d Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Fri, 30 Mar 2012 11:17:42 -0400
Subject: [PATCH] support for bedtools existing somewhere other than PATH

---
 scripts/makeBashScripts.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/makeBashScripts.py b/scripts/makeBashScripts.py
index 51b99d36..6b1a80dd 100644
--- a/scripts/makeBashScripts.py
+++ b/scripts/makeBashScripts.py
@@ -53,7 +53,7 @@ def main():
         
         script = open('bin/'  + old, 'w')
         script.write("#!/bin/sh\n")
-        script.write("bedtools " + new + " \"$@\"\n")
+        script.write("${0%/*}/bedtools " + new + " \"$@\"\n")
         script.close()
 
 if __name__ == "__main__":