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Commits on Aug 16, 2010
  1. Updated groupBy examples.

    committed Aug 16, 2010
  2. Updated the unionBedGraphs help.

    committed Aug 16, 2010
  3. Updated version.

    committed Aug 16, 2010
Commits on Aug 6, 2010
  1. Minor tweaks.

    committed Aug 6, 2010
Commits on Aug 5, 2010
Commits on Aug 4, 2010
  1. Multiple changes.

    	1. Fixed bug where an extra tab is inserted prior to \n in the report*Newline methods.
    	2. Fixed bug causing incorrect behavior when first bed feature has stant and end = 0.
    committed Aug 4, 2010
Commits on Jul 25, 2010
Commits on Jul 23, 2010
  1. Added GetTag logic for bamToBed

    committed Jul 23, 2010
Commits on Jul 22, 2010
Commits on Jul 21, 2010
Commits on Jul 18, 2010
  1. Added fileType.cpp to auto-detect gzipped files (Thanks to Assaf Gord…

    …on.)
    
    Tweaks to processHits in intersectBed for speed.
    committed Jul 18, 2010
Commits on Jul 17, 2010
  1. Updated overlap usage statement.

    committed Jul 17, 2010
  2. Fixed bug in FindOneOrMoreOverlapsPerBin.

    	The overlap variable was a CHRPOS.  The negative overlaps were reported as positive causing
            false hits when using BAM input.
    committed Jul 17, 2010
Commits on Jul 15, 2010
  1. Fixed bug in intersectBed causing -r to not report the same result wh…

    …en files are swapped.
    committed Jul 15, 2010
Commits on Jul 6, 2010
  1. Tracking the tabFile Makefile.

    committed Jul 6, 2010
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