Invalid Pointer Error in genomeCoverageBed run

[Rhinogradentia]

Hi there,

I'm trying to convert BAM to bed using genomeCoverageBed. I used this already successfull with other BAM files, but this time I get the error below.
I already used the latest bedtools2 version in which the segmentation fault from genomeCoverageBed should be solved. I also tried to run this on a server with more capacities, but no differences.

The output-file stops after the first chromosome. The input BAM is only 344 MB, so not that big.

Has anyone an idea for a solution?
Help really appreciated.
Thank you.

$ ../bedtools2/genomeCoverageBed -ibam 60326_mapped_sorted.bam -bg > 60326.bdg
*** Error in `../bedtools2/bedtools': munmap_chunk(): invalid pointer: 0x00007fe56923b010 ***
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x7908b)[0x7fe56a8c308b]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x1f8)[0x7fe56a8d0ed8]
../bedtools2/bedtools(+0xa66bb)[0x563b4e8476bb]
../bedtools2/bedtools(+0xa7e90)[0x563b4e848e90]
../bedtools2/bedtools(+0xa88dc)[0x563b4e8498dc]
../bedtools2/bedtools(+0xac8b5)[0x563b4e84d8b5]
../bedtools2/bedtools(+0x15da8)[0x563b4e7b6da8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf1)[0x7fe56a86a3f1]
../bedtools2/bedtools(+0x1b1ea)[0x563b4e7bc1ea]
======= Memory map: ========
563b4e7a1000-563b4e974000 r-xp 00000000 00:41 2034                       /home/.../bedtools2/bedtools
563b4eb74000-563b4eb7a000 r--p 001d3000 00:41 2034                       /home/.../bedtools2/bedtools
563b4eb7a000-563b4eb7b000 rw-p 001d9000 00:41 2034                       /home/.../bedtools2/bedtools
563b4eb7b000-563b4eb7d000 rw-p 00000000 00:00 0 
563b504b4000-563b5050a000 rw-p 00000000 00:00 0                          [heap]
7fe56923b000-7fe56a84a000 rw-p 00000000 00:00 0 
7fe56a84a000-7fe56aa08000 r-xp 00000000 00:16 3078776                    /lib/x86_64-linux-gnu/libc-2.24.so
7fe56aa08000-7fe56ac07000 ---p 001be000 00:16 3078776                    /lib/x86_64-linux-gnu/libc-2.24.so
7fe56ac07000-7fe56ac0b000 r--p 001bd000 00:16 3078776                    /lib/x86_64-linux-gnu/libc-2.24.so
7fe56ac0b000-7fe56ac0d000 rw-p 001c1000 00:16 3078776                    /lib/x86_64-linux-gnu/libc-2.24.so
7fe56ac0d000-7fe56ac11000 rw-p 00000000 00:00 0 
7fe56ac11000-7fe56ac27000 r-xp 00000000 00:16 3032609                    /lib/x86_64-linux-gnu/libgcc_s.so.1
7fe56ac27000-7fe56ae26000 ---p 00016000 00:16 3032609                    /lib/x86_64-linux-gnu/libgcc_s.so.1
7fe56ae26000-7fe56ae27000 r--p 00015000 00:16 3032609                    /lib/x86_64-linux-gnu/libgcc_s.so.1
7fe56ae27000-7fe56ae28000 rw-p 00016000 00:16 3032609                    /lib/x86_64-linux-gnu/libgcc_s.so.1
7fe56ae28000-7fe56af30000 r-xp 00000000 00:16 3078780                    /lib/x86_64-linux-gnu/libm-2.24.so
7fe56af30000-7fe56b12f000 ---p 00108000 00:16 3078780                    /lib/x86_64-linux-gnu/libm-2.24.so
7fe56b12f000-7fe56b130000 r--p 00107000 00:16 3078780                    /lib/x86_64-linux-gnu/libm-2.24.so
7fe56b130000-7fe56b131000 rw-p 00108000 00:16 3078780                    /lib/x86_64-linux-gnu/libm-2.24.so
7fe56b131000-7fe56b2aa000 r-xp 00000000 00:16 3034161                    /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.22
7fe56b2aa000-7fe56b4a9000 ---p 00179000 00:16 3034161                    /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.22
7fe56b4a9000-7fe56b4b3000 r--p 00178000 00:16 3034161                    /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.22
7fe56b4b3000-7fe56b4b5000 rw-p 00182000 00:16 3034161                    /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.22
7fe56b4b5000-7fe56b4b9000 rw-p 00000000 00:00 0 
7fe56b4b9000-7fe56b4d4000 r-xp 00000000 00:16 3034227                    /lib/x86_64-linux-gnu/libz.so.1.2.11
7fe56b4d4000-7fe56b6d3000 ---p 0001b000 00:16 3034227                    /lib/x86_64-linux-gnu/libz.so.1.2.11
7fe56b6d3000-7fe56b6d4000 r--p 0001a000 00:16 3034227                    /lib/x86_64-linux-gnu/libz.so.1.2.11
7fe56b6d4000-7fe56b6d5000 rw-p 0001b000 00:16 3034227                    /lib/x86_64-linux-gnu/libz.so.1.2.11
7fe56b6d5000-7fe56b6fb000 r-xp 00000000 00:16 3078772                    /lib/x86_64-linux-gnu/ld-2.24.so
7fe56b8d0000-7fe56b8d5000 rw-p 00000000 00:00 0 
7fe56b8f6000-7fe56b8fa000 rw-p 00000000 00:00 0 
7fe56b8fa000-7fe56b8fb000 r--p 00025000 00:16 3078772                    /lib/x86_64-linux-gnu/ld-2.24.so
7fe56b8fb000-7fe56b8fc000 rw-p 00026000 00:16 3078772                    /lib/x86_64-linux-gnu/ld-2.24.so
7fe56b8fc000-7fe56b8fd000 rw-p 00000000 00:00 0 
7fff7f794000-7fff7f7b6000 rw-p 00000000 00:00 0                          [stack]
7fff7f7bd000-7fff7f7bf000 r--p 00000000 00:00 0                          [vvar]
7fff7f7bf000-7fff7f7c1000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
Aborted (core dumped)