update tests for dbsnp 147

arq5x · Jul 26, 2016 · 23695a8 · 23695a8
1 parent 9423ab9
commit 23695a8
Show file tree

Hide file tree

Showing 4 changed files with 3 additions and 4 deletions.
diff --git a/.gitignore b/.gitignore
@@ -3,6 +3,8 @@
 *.swp
 *.db
 
+test/err
+test/_err
 test/exp*
 test/obs*
 test/*.gbi

diff --git a/gemini/gemini_update.py b/gemini/gemini_update.py
@@ -41,7 +41,6 @@ def release(parser, args):
         test_dir = os.path.join(os.path.dirname(os.path.dirname(base)), "github_gemini")
         if not os.path.exists(test_dir) or os.path.isdir(test_dir):
             _update_testbase(test_dir, repo, gemini_cmd)
-        print "Run test suite with: cd %s && bash master-test.sh" % test_dir
 
 def _get_install_script():
     try:

diff --git a/gemini/scripts/gemini_install.py b/gemini/scripts/gemini_install.py
@@ -86,8 +86,6 @@ def main(args, remotes=remotes):
     if args.install_data:
         print(" Data installed in:\n  %s" % args.datadir)
         print(" NOTE: Install data files for GERP_bp & CADD_scores (not installed by default).\n ")
-    print(" Run tests with:\n  cd %s && bash master-test.sh" %
-          (os.path.join(os.path.dirname(anaconda["dir"]), "github_gemini")))
 
     shutil.rmtree(work_dir)
 

diff --git a/test/test-pop.sh b/test/test-pop.sh
@@ -41,7 +41,7 @@ rm obs exp
 
 echo "1	rs201219564
 1	rs140739101
-1	rs75062661
+1	rs2691305
 1	rs200505207
 1	rs200676709
 1	rs41285790