Bioinformatics Programmer/Analyst at @PavlidisLab
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The University of British Columbia
- Vancouver
- https://arteymix.github.io/about
- @arteymix@mastodon.social
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PavlidisLab/rdp Public
Researcher Gene Registry. Originally developed for the Canadian Rare Disease Models & Mechanisms Network
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PavlidisLab/rnaseq-pipeline Public
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
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2,490 contributions in the last year
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Activity overview
Contribution activity
March 2023
Created 92 commits in 5 repositories
Created a pull request in flathub/org.develz.Crawl that received 2 comments
Use X11 in fallback mode
Wayland is already the default right now for SDL2, so we can enforce a safer behaviour by default.
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2
comments
Opened 1 other pull request in 1 repository
PavlidisLab/Gemma
1
open
Reviewed 2 pull requests in 2 repositories
PavlidisLab/Gemma
1 pull request
flathub/flathub
1 pull request
Created an issue in PavlidisLab/Gemma that received 12 comments
Enhance detection of scale type from data
Follow up of PavlidisLab/GemmaCuration#296 with implementation requirements. consider datasets that have been Z-transformed, detected via mean ze…
9 of 14 tasks
Opened 21 other issues in 2 repositories
PavlidisLab/Gemma
9
open
8
closed
- Make our SQL queries comply with ONLY_FULL_GROUP_BY mode
- Add tests to ensure that raw and processed vectors are loaded in bulk
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Deprecate
Session.update
in favourSession.merge
- Remove oldQT column in QUANTITATION_TYPE
- Ontology inference does not work with part of relations
- Deprecate and remove GEEQ quality and suitability score manual override
- Only expose GEEQ quality score and hide manual override
- Add intelligible labels to GO evidence codes
- Use an enumerated type for batch effect
- Prevent filtering by unlisted properties
- Measurement type, kindCV and representation properties are not resolved
- Batch confound test threw a NonStrictlyPositiveException! Returning null.
- Non unique GEEQ error when reprocessing data vectors
- Gene multifunctionality rank is not initialized in search results
- Suppress JenaException when the ontology service initialization thread is interrupted
- Exclude BLOBs and CLOBs from filterable properties
- Backports from the development branch