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Arvados Workbench 2

Setup

npm install yarn
yarn install

Install redux-devtools-extension

Start project for development

yarn start

Start project for development inside Docker container

make workbench2-build-image
# (create public/config.json, see "Run time configuration" below)
docker run -ti -v$PWD:$PWD -p 3000:3000 -w$PWD workbench2-build /bin/bash
# (inside docker container)
yarn install
yarn start

Run unit tests

make unit-tests

Run end-to-end tests

make integration-tests

Run end-to-end tests in a Docker container

make integration-tests-in-docker

Run tests interactively in container

xhost +local:root
ARVADOS_DIR=/path/to/arvados
docker run -ti -v$PWD:$PWD -v$ARVADOS_DIR:/usr/src/arvados -w$PWD --env="DISPLAY" --volume="/tmp/.X11-unix:/tmp/.X11-unix:rw" workbench2-build /bin/bash
(inside container)
yarn run cypress install
tools/run-integration-tests.sh -i -a /usr/src/arvados

Production build

yarn build

Package build

make packages

Build time configuration

You can customize project global variables using env variables. Default values are placed in the .env file.

Example:

REACT_APP_ARVADOS_CONFIG_URL=config.json yarn build

Run time configuration

The app will fetch runtime configuration when starting. By default it will try to fetch /config.json. In development mode, this can be found in the public directory. You can customize this url using build time configuration.

Currently this configuration schema is supported:

{
    "API_HOST": "string",
    "VOCABULARY_URL": "string",
    "FILE_VIEWERS_CONFIG_URL": "string",
}

API_HOST

The Arvados base URL.

The REACT_APP_ARVADOS_API_HOST environment variable can be used to set the default URL if the run time configuration is unreachable.

VOCABULARY_URL

Local path, or any URL that allows cross-origin requests. See Vocabulary JSON file example.

To use the URL defined in the Arvados cluster configuration, remove the entire VOCABULARY_URL entry from the runtime configuration. Found in /config.json by default.

FILE_VIEWERS_CONFIG_URL

Local path, or any URL that allows cross-origin requests. See:

File viewers config file example

File viewers config scheme

To use the URL defined in the Arvados cluster configuration, remove the entire FILE_VIEWERS_CONFIG_URL entry from the runtime configuration. Found in /config.json by default.

Plugin support

Workbench supports plugins to add new functionality to the user interface. For information about installing plugins, the provided example plugins, see src/plugins/README.md.

Licensing

Arvados is Free Software. See COPYING for information about Arvados Free Software licenses.