SimonisLab/content/PublicationsPresentations.qmd at main · asimonis/SimonisLab · GitHub

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---
title: Publications and Presentations
---

## Journal Articles

1.     [Rankin S., Sakai T., Archer F.I., Barlow J., Cholewiak D., DeAngelis A.I., McCullough J.L., Oleson E.M., **Simonis A.E.,** Soldevilla M.S., Trickey J.S. (2024) Open-source machine learning BANTER acoustic classification of beaked whale echolocation pulses. *Ecological Informatics*. 1;80:102511](https://www.sciencedirect.com/science/article/am/pii/S1574954124000530).

2.     Krumpel, A., Rice, A., Frasier, K. E., Reese, F., Trickey, J. S., **Simonis, A. E**., ... & D’Spain, G. L. (2021) Long-Term Patterns of Noise From Underwater Explosions and Their Relation to Fisheries in Southern California. *Journal of the Acoustical Society of America*, 150(3), 1821-1829.

3.     McCullough, J.L.K., **Simonis, A. E.,** Sakai, T., & Olson, E. M. (2021)Acoustic classification of false killer whales in the Hawaiian Islands based on comprehensive vocal repertoire. *JASA Express Letters*, *1*(7), 071201

4.     **Simonis, A. E.,** Trickey, J., Barlow, J., Rankin, S., Urban, J. Rojas-Bracho, L. & Moore, J.E. (2020) Passive Acoustic Survey of Deep-Diving Odontocetes in the California Current Ecosystem 2018: Final Report. *NOAA Tech Memo:* NMFS-SWFSC-630.

5.     **Simonis, A. E.,** Forney, K. A., Rankin, S., Ryan, J., Zhang, Y., DeVogelaere, A., ... & Baumann-Pickering, S. (2020). Seal Bomb Noise as a Potential Threat to Monterey Bay Harbor Porpoise. *Frontiers in Marine Science*, *7*, 142.

6.     **Simonis, A. E.,** Brownell Jr, R. L., Thayre, B. J., Trickey, J. S., Oleson, E. M., Huntington, R., & Baumann-Pickering, S. (2020). Co-occurrence of beaked whale strandings and naval sonar in the Mariana Islands, Western Pacific. *Proceedings of the Royal Society B*, *287*(1921), 20200070.

7.     **Simonis, A.E.,** Roch, M.A., Baily, B., Barlow, J., Clemesha, R.E.S, Iacobellis, S., Hildebrand, J.A., Baumann-Pickering, S. (2017). Lunar cycles affect common dolphin (*Delphinus delphis*) foraging in the Southern California Bight. *Marine Ecology Progress Series*.

8.     Reyes Reyes, M.V., Baumann-Pickering, S., **Simonis, A.E**., Trickey, J., Melcon, M., Hildebrand, J.A., Iniguez, M. (2017). High-frequency modulated signals recorded off Antarctic area: Are killer whales emitting them? *Australian Acoustics*.

9.     Bayless, A.R., Oleson, E.M., Baumann-Pickering, S**., Simonis, A.E**, Marchetti, J., Martin, S., and Wiggins, S.M. (2017). Acoustically Monitoring the Hawaii Longline Fishery for Interactions with False Killer Whales. *Fisheries Research, 190*, 122-131.

10.  Baumann-Pickering, S., **Simonis, A.E.,** Oleson, E. M., Baird, R. W., Roch, M. A., and Wiggins, S. M. (2015). False killer whale and short-finned pilot whale acoustic identification. *Endangered Species Research, 28(2)*, 97-108.

11.  Rankin, S., Oswald, J. N., **Simonis, A.E**., and Barlow, J. (2015). Vocalizations of the rough-toothed dolphin, Steno bredanensis, in the Pacific Ocean. *Marine Mammal Science, 31(4)*, 1538-1548.

12.  Samarra, F.I., Deecke, V.B., **Simonis, A.E.** and Miller, P.J., (2015). Geographic variation in the time-frequency characteristics of high-frequency whistles produced by killer whales (*Orcinus orca*). *Marine Mammal Science, 31(2)*, 688-706.

13.  Baumann-Pickering S., Roch M.A., Brownell Jr R.L., **Simonis A.E**., McDonald M.A., et al. (2014). Spatio-Temporal Patterns of Beaked Whale Echolocation Signals in the North Pacific. *PLoS ONE, 9(1)*

14.  Baumann-Pickering, S., McDonald, M.A., **Simonis, A.E**., Berga, A.S., Merkens, K.P., Oleson, E.M., Roch, M.A., Wiggins, S.M., Rankin, S., Yack, T.M. and Hildebrand, J.A., (2013). Species-specific beaked whale echolocation signals. *The Journal of the Acoustical Society of America, 134(3)*, 2293-2301.

15.  Baumann-Pickering, S., **Simonis, A.E**., Wiggins, S.M., Brownell Jr, R.L. and Hildebrand, J.A., (2013). Aleutian Islands beaked whale echolocation signals. *Marine Mammal Science, 29(1)*, 221-227.

16.  **Simonis, A.E.,** Baumann-Pickering, S., Oleson, E., Melcon, M.L., Gassmann, M., Wiggins, S.M. and Hildebrand, J.A., (2011). High-frequency modulated signals of killer whales (*Orcinus orca*) in the North Pacific. *The Journal of the Acoustical Society of America, 130(4)*, 2322-2322.

## Master's Theses

Bozinovic, Marina. (2024). *Assessing noise exposure to beaked and sperm whales in the California Current.* \[Master's Thesis, San Francisco State University\]. <https://doi.org/10.46569/j3860f94c>

Vanfleet Brown, Jackson. (2024). *Classification of species producing narrowband high-frequency echolocation clicks in the California Current.* \[Master's Thesis, San Francisco State University\]. <https://doi.org/10.46569/1z40m1957>

Czeck, Geo. (2023). *Snapping shrimp (Alpheidae) acoustic behavior reflects changing conditions within the San Francisco Bay Estuary.* \[Master's Thesis, San Francisco State University\]. <https://doi.org/10.46569/rb68xk566>

## Reports

Rankin, S., Burger, K., Hom-Weaver, C., Palmer, K., Sakai, T., **Simonis, A.** (2024). Final [Report for Adrift in the California Current Survey: Passive Acoustic Monitoring in the California Current using Drifting Recorders.](https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsael-swfsc.github.io%2FAdrift%2F&data=05%7C02%7Casimonis%40sfsu.edu%7Cf984d2a6fb8542a5be9c08dd157ab906%7Cd8fbe335822c41a987747f16709aac9f%7C0%7C0%7C638690339197640598%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=VZLW1MEQOEdvP19FVWID8tzC6MzF55ddvLrQPgcdiHY%3D&reserved=0) Camarillo (CA): U.S. Department of the Interior, Bureau of Ocean Energy Management. 97 p. Report No.: OCS Study BOEM 2024-047. Contract No.: G14 M20PG00013.