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Added git clone information to README

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1 parent b5fc676 commit bbb31430f7ffe650091feb838e637e977a0ee00c Asis Hallab committed Mar 7, 2012
Showing with 12 additions and 5 deletions.
  1. +12 −5 README.textile
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@@ -14,11 +14,22 @@ Shared tokens with Gene-Ontology Annotations increase the description-scoring
in order to use standard nomenclature where possible. Finally the best scoring
description is assigned.
-h2. 1 Requirements:
+h2. 1.1 Requirements:
AHRD is a Java-Program which requires Java 1.5 or higher.
+h2. 1.2 Installation:
+
+h3. 1.2.1 Get AHRD
+
+Copy (clone) AHRD to your computer using git:
+<pre>git clone git://github.com/asishallab/AHRD.git</pre>
+
+h3. 1.2.2 Build the executable jar:
+
+Running <pre>ant dist</pre> will create the executable JAR-File: ./dist/ahrd.jar
+
h2. 2 Usage:
All AHRD-Inputs are passed to AHRD in a single YML-File.
@@ -41,10 +52,6 @@ AHRD is recommended to be run on batches of 1,000 to 2,000 proteins. If you
want to annotate a whole genome use the included Batcher to split your
input-data into Batches of appropriate size (see section Batcher).
-h3. 2.1 Building the executable jar:
-
-Running <pre>ant dist</pre> will create the executable JAR-File: ./dist/ahrd.jar
-
h3. 2.2 AHRD Example run:
<pre>java -Xmx2g -jar ./dist/ahrd.jar ./test/resources/ahrd_input_test_run.yml </pre>

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