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npairs_per_object_3d has incorrect indexing #606
Total counts are correct, but the returned array needs to be "unsorted" in the same fashion as is currently done for the isolation functions.
CC @duncandc - I'll fix this, just fyi since you use this function. I'll tag this Issue in a commit I'm of a branch I'm about to push to my fork, where the commit provides the unit-test revealing the bug.