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=============================================================================== == wwwfastacmd == =============================================================================== wwwfastacmd are four files to add to wwblast NCBI tool, to be able to use fastacmd through a web interface, in other words, to be able to retrieve a sequence from a blastdb based in its ID. This web interface use the same strcuture than wwwblast. It has two important files: * fastacmd.html, with the form to submit the query. * fastacmd.cgi, with all the code to check the submitted data and the line to executate the fastacmd. It is performed using `STRING` (http://perldoc.perl.org/perlop.html#%60STRING%60), instead system to avoid the creation of any temp file. The output is directly redirect to a perl variable and printed with the cgi script. Installation and configuration: =============================== 1) Follow the instructions to install and configure NCBI wwwblast. (http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/wwwblast/) 2) Download the wwwfastacmd files and copy the following files in the locations: fastacmd.html => /blast fastacmd.cgi => /blast fastacmd_help.html => /blast/docs fastacmd_form.gif => /blast/images 3) Replace index.html with the index.html from the wwwfastacmd files. 4) Open fastacmd.html, add any blastdb in the section: <select name="DATALIB"> <option VALUE = "blastdb_localization"> blastdb name </select> 5) Check that the files are readables for anyone.