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CLEANUP: Removed Windows line breaks

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jpeelle committed Oct 1, 2018
1 parent cc2e390 commit d26ab57f33bb9b4d5029f1dc2c3287b37fdd2b28
@@ -43,7 +43,7 @@
<!-- Overriding settings from aamod_firstlevel_model.xml -->
<includemovementpars>0</includemovementpars>

<inputstreams>
<inputstreams>
<stream isessential='0'>epi_dicom_header</stream>
<stream>epiBETmask</stream>
<stream ismodified='0'>epi</stream>
@@ -3,7 +3,7 @@
<tasklist>
<currenttask mfile_alias='aamod_GLMdenoise' inheritfrom='aamod_GLMdenoise' domain='subject' desc='GLM denoising of data...' modality='MRI'>

<inputstreams>
<inputstreams>
<stream>epi_dicom_header</stream>
<stream isessential='0'>epiBETmask</stream>
<stream ismodified='0'>epi</stream>
@@ -6,7 +6,7 @@
<currenttask domain='session' desc='Apply realignment parameters from one stream to another' modality='MRI'>
<permanenceofoutput>1</permanenceofoutput>

<inputstreams>
<inputstreams>
<stream>epi</stream>
<stream>epi_nulled</stream>
</inputstreams>
@@ -89,7 +89,7 @@
<bf></bf>
</xBF>

<inputstreams>
<inputstreams>
<stream isrenameable='1' ismodified='0'>epi</stream>
<stream isessential='0'>ppi</stream>
<stream isessential='0'>listspikes</stream>
@@ -73,7 +73,7 @@
<bf></bf>
</xBF>

<inputstreams>
<inputstreams>
<stream isrenameable='1' ismodified='0'>epi</stream>
<stream isessential='0'>ppi</stream>
<stream isessential='0'>listspikes</stream>
@@ -17,7 +17,7 @@
-->
<firstlevelmasking>1</firstlevelmasking>

<inputstreams>
<inputstreams>
<stream>firstlevel_spm</stream>
</inputstreams>

@@ -102,7 +102,7 @@
</event>
</model>

<inputstreams>
<inputstreams>
<stream>epi</stream>
<stream isessential='0'>epi_dicom_header</stream>
<stream isessential='0'>sliceorder</stream>
@@ -14,7 +14,7 @@
<HParam desc='High pass filter cutoff, in seconds - as for SPM'>128</HParam>

<inputstreams>
 <stream>epi</stream>
<stream>epi</stream>
<stream>epi_dicom_header</stream>
</inputstreams>

@@ -5,7 +5,7 @@

<permanenceofoutput>1</permanenceofoutput>

<inputstreams>
<inputstreams>
<stream>epi_nulled</stream>
</inputstreams>

@@ -2,7 +2,7 @@
<aap>
<tasklist>
<currenttask domain='session' mfile_alias='aamod_mapstreams' desc='Map streams' modality='MRI'>


<permanenceofoutput>1</permanenceofoutput>

<inputstreams>
@@ -7,7 +7,7 @@

<truncatevolumes>1</truncatevolumes> <!-- If different numbers of volumes across subjects, trucate to least (set to 1) or throw error (set to 0) -->
<inputstreams>
 <stream ismodified='0'>epi</stream>
<stream ismodified='0'>epi</stream>
</inputstreams>

<outputstreams>
@@ -10,7 +10,7 @@

<permanenceofoutput>2</permanenceofoutput>

<inputstreams>
<inputstreams>
<stream isessential='0'>firstlevel_brainmask</stream>
<stream>epi</stream>
</inputstreams>
@@ -10,7 +10,7 @@
<truncatevolumes>1</truncatevolumes> <!-- If different numbers of volumes across subjects, trucate to least (set to 1) or throw error (set to 0) -->

<inputstreams>
 <stream>epi</stream>
<stream>epi</stream>
<stream>meanepitimecourse</stream>
</inputstreams>

@@ -2,7 +2,7 @@
<aap>
<tasksettings>
<aamod_moviecorr_summary domain='isc_session' desc='Movie correlation summary' modality='MRI'>
<inputstreams>
<inputstreams>
<stream>moviecorr_loo</stream>
</inputstreams>
<outputstreams>
@@ -13,7 +13,7 @@
<contrasts>1</contrasts>
<voi>1</voi> <!-- vois index -->

<inputstreams>
<inputstreams>
<stream>firstlevel_spm</stream>
<stream>vois</stream>
</inputstreams>
@@ -37,7 +37,7 @@
<jobtype>fMRI</jobtype>
</specialrequirements>

<inputstreams>
<inputstreams>
<stream>epi</stream>
</inputstreams>

@@ -18,7 +18,7 @@
<jobtype>fMRI</jobtype>
</specialrequirements>

<inputstreams>
<inputstreams>
<stream>epi</stream>
</inputstreams>

@@ -20,7 +20,7 @@
<jobtype>fMRI</jobtype>
</specialrequirements>

<inputstreams>
<inputstreams>
<stream>epi</stream>
<stream>weightingImage</stream>
</inputstreams>
@@ -10,7 +10,7 @@

<permanenceofoutput>1</permanenceofoutput>

<inputstreams>
<inputstreams>
<stream>epi</stream>
</inputstreams>

@@ -22,7 +22,7 @@

<summaryFun>mean</summaryFun>

<inputstreams>
<inputstreams>
<stream>firstlevel_spm</stream>
<stream ismodified='0'>epi</stream>
</inputstreams>
@@ -7,7 +7,7 @@
<!-- Given that input stream rois usually has more than one file, which one do we use as the seed? -->
<seedROIindex>1</seedROIindex>

<inputstreams>
<inputstreams>
<stream>rois</stream>
<stream>firstlevel_spm</stream>
<stream ismodified='0'>epi</stream>
@@ -4,7 +4,7 @@
<currenttask domain='study' desc='Run tensor ICA using FSL melodic' modality='MRI'>
<permanenceofoutput>3</permanenceofoutput>
<inputstreams>
 <stream>epi</stream>
<stream>epi</stream>
<stream>epi_dicom_header</stream>
<stream>structural</stream>
</inputstreams>
@@ -17,7 +17,7 @@
<dropImgs></dropImgs>
</data>

<inputstreams>
<inputstreams>
<stream ismodified='0'>epi</stream>
</inputstreams>

@@ -21,7 +21,7 @@
<spec>0</spec>
</VOI>

<inputstreams>
<inputstreams>
<stream>firstlevel_spm</stream>
<stream>firstlevel_betas</stream>
<stream>firstlevel_spmts</stream>
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