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GIFT_Defaults.mat
aamod_ANTS_EPIwarp.m
aamod_ANTS_EPIwarp.xml
aamod_ANTS_build_MMtemplate.m
aamod_ANTS_build_MMtemplate.xml
aamod_ANTS_build_template.m
aamod_ANTS_build_template.xml
aamod_ANTS_build_template_mEPI.xml
aamod_ANTS_struc2epi.m
aamod_ANTS_struc2epi.xml
aamod_ANTS_struc2template.m
aamod_ANTS_struc2template.xml
aamod_ANTS_warp.m
aamod_ANTS_warp.m~a2bee70bdd3d594b54248eaeab9bc10b2de2ca1c
aamod_ANTS_warp.m~bidsfix
aamod_ANTS_warp_EPI.xml
aamod_ANTS_warp_ROIs.xml
aamod_ANTS_warp_cons.xml
aamod_ANTS_warp_structural.xml
aamod_ASL.m
aamod_ASL.xml
aamod_ASL_coreg_extended_2.xml
aamod_ASL_norm_write.xml
aamod_ASL_norm_write_dartel.xml
aamod_ASL_smooth.xml
aamod_CoSMoMVPA.m
aamod_CoSMoMVPA.xml
aamod_GLMdenoise.m
aamod_GLMdenoise.xml
aamod_GLMdenoise_noEPI.xml
aamod_LI.m
aamod_LOO_LouvainCluster.xml
aamod_LoAd.m
aamod_LoAd.xml
aamod_LoAd2SPM.m
aamod_LoAd2SPM.xml
aamod_LouvainCluster.m
aamod_MP2RAGE.m
aamod_MP2RAGE.xml
aamod_MPM.m
aamod_MPM.xml
aamod_MTI2MTR.m
aamod_MTI2MTR.xml
aamod_MTI_coreg_extended_2.xml
aamod_MTI_norm_write_dartel.xml
aamod_MTI_roi_extract.xml
aamod_MTI_roi_valid.xml
aamod_applyVDM.m
aamod_autoidentifyseries.m
aamod_autoidentifyseries_ge.xml
aamod_autoidentifyseries_philips.xml
aamod_autoidentifyseries_siemens.xml
aamod_autoidentifyseries_timtrio.xml
aamod_bet.m
aamod_bet.xml
aamod_bet_diffusion.xml
aamod_bet_epi_masking.m
aamod_bet_epi_masking.xml
aamod_bet_epi_reslicing.m
aamod_bet_epi_reslicing.xml
aamod_bet_freesurfer.m
aamod_bet_freesurfer.xml
aamod_bet_meanEPI.xml
aamod_bet_nodif.xml
aamod_bet_premask.m
aamod_bet_premask.xml
aamod_biascorrect.m
aamod_biascorrect.xml
aamod_biascorrect_ANTS.m
aamod_biascorrect_ANTS.xml
aamod_biascorrect_ANTS_meanEPI.xml
aamod_biascorrect_meanEPI.xml
aamod_biascorrect_segment8.m
aamod_biascorrect_segment8.xml
aamod_biascorrect_segment8_multichan.m
aamod_biascorrect_segment8_multichan.xml
aamod_biascorrect_segment8_t1.xml
aamod_biascorrect_structural.xml
aamod_biascorrect_t2.xml
aamod_binarizegrey.xml
aamod_binarizeimage.m
aamod_binarizeimage.xml
aamod_binaryfromlabels.m
aamod_binarygreyfromlabels.xml
aamod_brainmask.m
aamod_brainmask.xml
aamod_brainmask_native.xml
aamod_brainmaskcombine.m
aamod_brainmaskcombine.xml
aamod_checkparameters.m
aamod_checkparameters.xml
aamod_clusteringXValidation.m
aamod_clusteringXValidation.xml
aamod_compSignal.m
aamod_compSignal.xml
aamod_compareoverlap.m
aamod_compareoverlapgrey.xml
aamod_convert_diffusion.m
aamod_convert_diffusion.xml
aamod_convert_diffusion_phaseencode_direction.xml
aamod_convert_dmdx.m
aamod_convert_epis.m
aamod_convert_epis.xml
aamod_convert_fieldmaps.m
aamod_convert_fieldmaps.xml
aamod_convert_specialseries.m
aamod_convert_specialseries.xml
aamod_convert_structural.m
aamod_convert_structural.xml
aamod_convert_t1.xml
aamod_convert_t2.xml
aamod_copy_image_orientation.m
aamod_copy_image_orientation.xml
aamod_coreg_extended.m
aamod_coreg_extended.xml
aamod_coreg_extended_1.m
aamod_coreg_extended_1.xml
aamod_coreg_extended_2.m
aamod_coreg_extended_2.xml
aamod_coreg_extended_2_cons.xml
aamod_coreg_extended_2epi.xml
aamod_coreg_extended_2meanepi.xml
aamod_coreg_extended_MP2RAGE.xml
aamod_coreg_general.m
aamod_coreg_general.xml
aamod_coreg_general_session.xml
aamod_coreg_noss.m
aamod_coreg_noss.xml
aamod_coreg_noss_t1.xml
aamod_coreg_structural2fa.m
aamod_coreg_structural2fa.xml
aamod_coreg_structural2template.m
aamod_coreg_structural2template.xml
aamod_coreg_t2_structural.xml
aamod_coregisterstructural2template.m
aamod_coregisterstructural2template.xml
aamod_dartel_createtemplate.m
aamod_dartel_createtemplate.xml
aamod_dartel_createtemplate_5classes.xml
aamod_dartel_denorm.m
aamod_dartel_denormepi.xml
aamod_dartel_norm_write.xml
aamod_dartel_normmni.m
aamod_dartel_normmni.xml
aamod_dartel_normmni_5classes.xml
aamod_dartel_normmni_t1.xml
aamod_decodeDMLT.m
aamod_decodeDMLT.xml
aamod_denoiseANLM.m
aamod_denoiseANLM.xml
aamod_denoiseANLM_MP2RAGE.xml
aamod_denoiseANLM_nodicom.xml
aamod_diffusion_applyVDM.xml
aamod_diffusion_applytopup.m
aamod_diffusion_applytopup.xml
aamod_diffusion_bedpostx.m
aamod_diffusion_bedpostx.xml
aamod_diffusion_bet.xml
aamod_diffusion_convert_fieldmaps.xml
aamod_diffusion_coreg_extended_2DKI.xml
aamod_diffusion_coreg_extended_2DTI.xml
aamod_diffusion_dartel_denormDKI.xml
aamod_diffusion_dartel_denormDTI.xml
aamod_diffusion_dki_tractography_prepare.m
aamod_diffusion_dki_tractography_prepare.xml
aamod_diffusion_dkifit.m
aamod_diffusion_dkifit.xml
aamod_diffusion_dtifit.m
aamod_diffusion_dtifit.xml
aamod_diffusion_dtinlfit.m
aamod_diffusion_dtinlfit.xml
aamod_diffusion_eddy.m
aamod_diffusion_eddy.xml
aamod_diffusion_eddycorrect.m
aamod_diffusion_eddycorrect.xml
aamod_diffusion_extractnodif.m
aamod_diffusion_extractnodif.xml
aamod_diffusion_fieldmap2VDM.xml
aamod_diffusion_get_dicom_fieldmap.xml
aamod_diffusion_norm_write_DKI.xml
aamod_diffusion_norm_write_DTI.xml
aamod_diffusion_norm_write_dartel_DKI.xml
aamod_diffusion_norm_write_dartel_DTI.xml
aamod_diffusion_probtrackx.m
aamod_diffusion_probtrackx.xml
aamod_diffusion_probtrackxsummarize_group.m
aamod_diffusion_probtrackxsummarize_group.xml
aamod_diffusion_probtrackxsummarize_indv.m
aamod_diffusion_probtrackxsummarize_indv.xml
aamod_diffusion_roi_extract_dki.xml
aamod_diffusion_roi_extract_dti.xml
aamod_diffusion_roi_valid_dki.xml
aamod_diffusion_roi_valid_dti.xml
aamod_diffusion_rois_dartel_denormDKI.xml
aamod_diffusion_rois_dartel_denormDTI.xml
aamod_diffusion_smooth.xml
aamod_diffusion_topup.m
aamod_diffusion_topup.xml
aamod_diffusionfromnifti.m
aamod_diffusionfromnifti.xml
aamod_epifromnifti.m
aamod_epifromnifti.xml
aamod_evaluatesubjectnames.m
aamod_evaluatesubjectnames.xml
aamod_facemasking.m
aamod_facemasking.xml
aamod_fconn_computematrix.m
aamod_fconn_computematrix.xml
aamod_fconnmatrix_seedseed.m
aamod_fconnmatrix_seedseed.xml
aamod_fieldmap2VDM.m
aamod_fieldmap2VDM.xml
aamod_fieldmapfromnifti.m
aamod_fieldmapfromnifti.xml
aamod_firstlevel_LI.xml
aamod_firstlevel_contrasts.m
aamod_firstlevel_contrasts.xml
aamod_firstlevel_model.m
aamod_firstlevel_model.xml
aamod_firstlevel_model_1_config.m
aamod_firstlevel_model_1_config.xml
aamod_firstlevel_model_2_convolve.m
aamod_firstlevel_model_2_convolve.xml
aamod_firstlevel_model_3_estimate.m
aamod_firstlevel_model_3_estimate.xml
aamod_firstlevel_model_MVPaa.m
aamod_firstlevel_model_MVPaa.xml
aamod_firstlevel_model_collapsepredictors.m
aamod_firstlevel_model_collapsepredictors.xml
aamod_firstlevel_model_subrunsplit.m
aamod_firstlevel_model_subrunsplit.xml
aamod_firstlevel_threshold.m
aamod_firstlevel_threshold.xml
aamod_firstlevel_threshold_register2FS.xml
aamod_freesurfer_autorecon.m
aamod_freesurfer_autorecon1.xml
aamod_freesurfer_autorecon2.xml
aamod_freesurfer_autorecon3.xml
aamod_freesurfer_autorecon_all.xml
aamod_freesurfer_deface.m
aamod_freesurfer_deface.xml
aamod_freesurfer_deface_apply.m
aamod_freesurfer_deface_apply_t2.xml
aamod_freesurfer_initialise.m
aamod_freesurfer_initialise.xml
aamod_freesurfer_register.m
aamod_fsl_FAST.m
aamod_fsl_FAST.xml
aamod_fsl_FIRST.m
aamod_fsl_FIRST.xml
aamod_fsl_reorient2std.m
aamod_fsl_reorient2std_epi.xml
aamod_fsl_reorient2std_structural.xml
aamod_fsl_reorienttoMNI.m
aamod_fsl_reorienttoMNI.xml
aamod_fsl_reorienttoMNI_epi.xml
aamod_fsl_robustFOV.m
aamod_fsl_robustFOV.xml
aamod_fslmaths.m
aamod_fslmaths_bandpassfilter.xml
aamod_fslmerge.m
aamod_fslmerge.xml
aamod_fslsplit.m
aamod_fslsplit.xml
aamod_garbagecollection.m
aamod_garbagecollection.xml
aamod_get_dicom_diffusion.m
aamod_get_dicom_diffusion.xml
aamod_get_dicom_epi.m
aamod_get_dicom_epi.xml
aamod_get_dicom_fieldmap.m
aamod_get_dicom_fieldmap.xml
aamod_get_dicom_specialseries.m
aamod_get_dicom_specialseries.xml
aamod_get_dicom_structural.m
aamod_get_dicom_structural.xml
aamod_get_dicom_t1.xml
aamod_get_dicom_t2.xml
aamod_get_tSNR.m
aamod_get_tSNR.xml
aamod_ggmfit.m
aamod_ggmfit.xml
aamod_groupLouvainCluster.xml
aamod_highpass.m
aamod_highpass.xml
aamod_highpassfilter_epi.m
aamod_highpassfilter_epi.xml
aamod_importfilesasstream.m
aamod_importfilesasstream.xml
aamod_individualLouvainCluster.xml
aamod_input_staging.m
aamod_input_staging_firstlevel_fConnMatrix_avg.xml
aamod_listspikes.m
aamod_listspikes.xml
aamod_make_epis_float.m
aamod_make_epis_float.xml
aamod_mapstreams.m
aamod_mapstreams.xml
aamod_mapstreams2.xml
aamod_marsbar.m
aamod_marsbar.xml
aamod_mask_from_EPI.xml
aamod_mask_fromsegment.m
aamod_mask_fromsegment.xml
aamod_mask_fromstruct.m
aamod_mask_fromstruct.xml
aamod_maths.m
aamod_maths.xml
aamod_meanepitimecourse.m
aamod_meanepitimecourse.xml
aamod_meanstructural.m
aamod_meanstructural.xml
aamod_meg_average.m
aamod_meg_average.xml
aamod_meg_average_merged.xml
aamod_meg_convert.m
aamod_meg_convert.xml
aamod_meg_denoise_ICA_1.m
aamod_meg_denoise_ICA_1.xml
aamod_meg_denoise_ICA_2_applytrajectory.m
aamod_meg_denoise_ICA_2_applytrajectory.xml
aamod_meg_epochs.m
aamod_meg_epochs.xml
aamod_meg_get_fif.m
aamod_meg_get_fif.xml
aamod_meg_grandmean.m
aamod_meg_grandmean.xml
aamod_meg_maxfilt.m
aamod_meg_maxfilt.xml
aamod_meg_merge.m
aamod_meg_merge.xml
aamod_melodic.m
aamod_melodic.xml
aamod_modelestimate.m
aamod_movie.m
aamod_movie.xml
aamod_moviecorr_meantimecourse.m
aamod_moviecorr_meantimecourse.xml
aamod_moviecorr_summary.m
aamod_moviecorr_summary.xml
aamod_newsubj_init.m
aamod_newsubj_init.xml
aamod_norm8.xml
aamod_norm_noss.m
aamod_norm_noss.xml
aamod_norm_noss_cbu32channel.xml
aamod_norm_noss_coregextended.xml
aamod_norm_noss_diffusion_session.xml
aamod_norm_vbm.m
aamod_norm_vbm.xml
aamod_norm_write.m
aamod_norm_write.xml
aamod_norm_write_cons.xml
aamod_norm_write_cons_dartel.xml
aamod_norm_write_dartel.m
aamod_norm_write_dartel.xml
aamod_norm_write_epi_snr.xml
aamod_norm_write_meanepi.xml
aamod_norm_write_meanepi_dartel.xml
aamod_norm_write_spmts.xml
aamod_norm_write_tSNR.xml
aamod_normalisebytotalgrey.m
aamod_normalisebytotalgrey.xml
aamod_oneway_ANOVA.m
aamod_oneway_ANOVA.xml
aamod_pewarp_estimate.m
aamod_pewarp_estimate.xml
aamod_pewarp_write.m
aamod_pewarp_write.xml
aamod_possum.m
aamod_possum.xml
aamod_ppi_prepare.m
aamod_ppi_prepare.xml
aamod_realign.m
aamod_realign.xml
aamod_realign_noreslice.xml
aamod_realign_weighted.xml
aamod_realignunwarp.m
aamod_realignunwarp.xml
aamod_realignunwarpDCCN.xml
aamod_reorientto.m
aamod_reorientto_epi.xml
aamod_reorientto_fieldmap.xml
aamod_reorienttomiddle.m
aamod_reorienttomiddle_diffusion.xml
aamod_reorienttomiddle_epi.xml
aamod_reorienttomiddle_structural.xml
aamod_reslice.m
aamod_reslice.xml
aamod_resliceROI.m
aamod_resliceROI2epi.xml
aamod_reslice_rois.m
aamod_reslice_rois.xml
aamod_roi_extract.m
aamod_roi_extract_epi.xml
aamod_roi_extract_structural.xml
aamod_roi_valid.m
aamod_roi_valid_epi.xml
aamod_roi_valid_structural.xml
aamod_rois_coreg.xml
aamod_rois_coreg_extended_2.xml
aamod_rois_dartel_denormepi.xml
aamod_rois_getvalues.m
aamod_rois_norm_write_dartel.xml
aamod_secondlevel_GIFT.m
aamod_secondlevel_GIFT.xml
aamod_secondlevel_LI.xml
aamod_secondlevel_contrasts.m
aamod_secondlevel_contrasts.xml
aamod_secondlevel_model.m
aamod_secondlevel_model.xml
aamod_secondlevel_model_spmts.xml
aamod_secondlevel_randomise.m
aamod_secondlevel_randomise.xml
aamod_secondlevel_randomise_spmts.xml
aamod_secondlevel_threshold.m
aamod_secondlevel_threshold.xml
aamod_secondlevel_threshold_register2FS.xml
aamod_seedConnectivity.m
aamod_seedConnectivity.xml
aamod_seedConnectivity_ROIs.xml
aamod_segment.m
aamod_segment.xml
aamod_segment8.m
aamod_segment8.xml
aamod_segment8_multichan.xml
aamod_segment8_t1.xml
aamod_segmentvbm8.m
aamod_segmentvbm8.xml
aamod_slicetiming.m
aamod_slicetiming.xml
aamod_smooth.m
aamod_smooth.xml
aamod_smooth_cons.xml
aamod_smooth_epi_snr.xml
aamod_smooth_spmts.xml
aamod_smooth_tSNR.xml
aamod_special_convert_fieldmaps.xml
aamod_special_get_dicom_fieldmap.xml
aamod_split.m
aamod_split_epi.xml
aamod_structural_overlay.m
aamod_structural_overlay.xml
aamod_structural_smoothsegment.xml
aamod_structuralfromnifti.m
aamod_structuralfromnifti.xml
aamod_structuralstats.m
aamod_structuralstats.xml
aamod_study_init.m
aamod_study_init.xml
aamod_tSNR_EPI.m
aamod_tSNR_EPI.xml
aamod_temporalfilter.m
aamod_temporalfilter.xml
aamod_tensor_ica.m
aamod_tensor_ica.xml
aamod_tensorica_template.fsf
aamod_tissue_spectrum.m
aamod_tissue_spectrum.xml
aamod_tissue_spectrum_summarize.m
aamod_tissue_spectrum_summarize.xml
aamod_tissue_wavelets.m
aamod_tissue_wavelets.xml
aamod_tissue_wavelets_summarize.m
aamod_tissue_wavelets_summarize.xml
aamod_trimEPIVols.m
aamod_trimEPIVols.xml
aamod_tsdiffana.m
aamod_tsdiffana.xml
aamod_unnormalise_rois.m
aamod_unnormalise_rois.xml
aamod_unnormalise_rois2.m
aamod_unnormalise_seeds.xml
aamod_unnormalise_targets.xml
aamod_unzip_epis.xml
aamod_unzip_t1.xml
aamod_unzip_t1t2.xml
aamod_unzipstream.m
aamod_vois_extract.m
aamod_vois_extract.xml
aamod_waveletdespike.m
aamod_waveletdespike.xml
aamod_wholebrainepifromnifti.xml
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