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Exception safe file handling in 'split'
Include skipped bases in read instead of header
This makes it easier to skip bin identifer and later sort reads by bin
Don't include keys with no value in headers
Bump version to 0.2.1
Remove unused commands and options
Add --reverse flag to strip command
Bump version to v0.2.0
Remove dead code
Rename 'scan' to 'strip'
Strip primer in scan
Add information related to information that was stripped to header.
Fix typo in help
Close file handles on exit
Fixes a bug which would cause output files to be incomplete.
Add --output to split command
Open files once before iteration starts
Add initial support for 'split' command
Compile on GHC v7.0.4
Add --version option
Use primer length to shortcut edit dist recursion
More help, rename --position to --shift
Primer scan with skip, position, errors
The number of errors and the primer position are annotated in the FASTA
Partial implementation of primer scan
Start work on primer scanning
Simple command line parsing