Association Analysis
fgardos edited this page Dec 29, 2014
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General
Tutorial
Analysis tools
Worked examples
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Expression
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Functional
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Tools to analyze SNP data from GWAS (Genome-Wide Association Studies) and TDTs.
The basic association test is for a disease trait and is based on comparing allele frequencies between cases and controls (empirical p-values are available). Also implemented are the Chi-square case/control association test, Fisher's exact test, Linear, Logistic regression and TDT test (only for family-based analysis). As well some modifications are implemented as the SNP filtering on the basis of minor allele frequency.
- [Detailed documentation](wiki/Association Analysis Doc)
Find the Babelomics suite at http://babelomics.org