Changes in this version

As a response to the changes in the technologies this new version of Babelomics includes the possibility of analysing genomic and transcriptomics data from New Generation Sequencing (NGS) experiments. Thus, in addition to conventional microarray data, RNA-seq data and massive resequencing data can now be uploaded and analysed in similar ways. A detailed analysis of usage during the last four years has been used to discontinue a number of options that have been scarcely used. This has resulted in a simplified, more intuitive and more sustainable interface for Babelomics. New advanced options for visualization have been implemented. These include a network viewer for the representation of the results of network analysis, which allows users to customize the results and to produce high quality figures for papers, and a genome browser, Genome Maps, to represent SNPs or variants in their genomic context. A detailed analysis of usage during the last four years has been used to discontinue a number of options that have been scarcely used. This has resulted in a simplified, more intuitive and more sustainable interface for Babelomics.

The tools discontinued in this version are:

• Biclustering and time series for gene expression data
• The marmite and MarmiteScan tools for text-mining based enrichment.
• The GESBAP tool, which a can be now run in the gene set enrichment tool
• Genecodis
• Tissue phenotype based profiling