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- Detailed example of analysis of expression data in Babelomics: from raw data to expression differential and functional profiling
- Differential Expression for arrays
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- Functional Gene Set Network Enrichment
- Functional GO Enrichment
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- Main areas. Cancer
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- Main areas. Processing
- Main areas: Cancer
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- Main areas: Functional
- Main areas: Genomics
- Main areas: Processing
- Network Enrichment (SNOW)
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- Overview and pipelines
- p values adjusted for multiple testing
- PED
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- plink.assoc
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- Preprocessing for data matrix
- Preprocessing for microarrays
- Preprocessing for RNA Seq
- Processing
- Ranked
- Requirements
- RNA Seq Normalization
- RNA Seq pipeline
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- Single Enrichment
- Single Enrichment. Options
- SNPs array pipeline
- Software and databases used
- Technical Info
- The Babelomics Team
- tut_SNP_association
- Tutorial
- Tutorial Affymetrix Expression Microarray Normalization
- Tutorial Agilent One Color Microarray Normalization
- Tutorial Agilent Two Colors Microarray Normalization
- Tutorial Burden test
- Tutorial Class prediction
- Tutorial Clustering
- Tutorial Data matrix preprocessing
- Tutorial Differential Expression for arrays
- Tutorial Differential Expression for RNA Seq
- Tutorial Expression
- Tutorial Expression. Class comparison
- Tutorial Expression. Correlation
- Tutorial Expression. Survival
- Tutorial Functional
- Tutorial Genepix One Color Microarray Normalization
- Tutorial Genepix Two Colors Microarray Normalization
- Tutorial Genomics
- Tutorial OncodriveClust
- Tutorial OncodriveFM
- Tutorial Processing
- Tutorial SNP Association Analysis
- Tutorial SNP stratification
- Upload your data
- VCF 4.0
- VCF file pipeline
- Visualization tools
- Worked examples
- Workflow
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General
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Expression
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Functional
Clone this wiki locally
Using Babelomics
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Babelomics is designed as a web application so it can work on every OS: Windows, GNU/Linux and MacOS.
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This web application makes an intensive use of new web technologies and other cutting-edge web technologies such as Web Components, so only modern web browsers are fully supported, these include Chrome 36+, Firefox 32+, IE 10+, Safari 7+ and Opera 24+. We are working hard to make it compatible with other browsers.
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You only have to create an account to save you results, we give you a 10GB of disk space.
Local installations of Babelomics
The program is freely available for local installation. The code, along with instructions for the installation, is available in GitHub: https://github.com/babelomics/babelomics.
For any question, please contact with us: babelomics@cipf.es
Find the Babelomics suite at http://babelomics.org