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plink.tdt

Francisco García edited this page Jan 27, 2015 · 1 revision

Which generates the file

     plink.tdt

The main output file, plink.tdt, contains the following fields:

     CHR         Chromosome number
     SNP         SNP identifier
     A1          Minor allele code
     A2          Major allele code
     T           Transmitted minor allele count
     U           Untransmitted allele count
     OR          TDT odds ratio
     CHISQ       TDT chi-square statistic
     P           TDT asymptotic p-value
     A:U_PAR     Parental discordance counts
     CHISQ_PAR   Parental discordance statistic
     P_PAR       Parental discordance asymptotic p-value
     CHISQ_COM   Combined test statistic
     P_COM       Combined test asymptotic p-value
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