# packages in environment at /home/ubuntu/scratch/software/miniforge3/envs/ggc_env: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_kmp_llvm conda-forge alsa-lib 1.2.10 hd590300_0 conda-forge argcomplete 3.2.2 pyhd8ed1ab_0 conda-forge argh 0.31.2 pyhd8ed1ab_0 conda-forge attr 2.5.1 h166bdaf_1 conda-forge bcbio-gff 0.7.1 pyh7cba7a3_0 bioconda bifrost 1.3.1 h43eeafb_0 bioconda binutils 2.40 hdd6e379_0 conda-forge binutils_impl_linux-64 2.40 hf600244_0 conda-forge binutils_linux-64 2.40 hbdbef99_2 conda-forge biopython 1.80 py39hb9d737c_0 conda-forge blast 2.15.0 pl5321h6f7f691_1 bioconda boost-cpp 1.84.0 h44aadfe_0 conda-forge brotli 1.1.0 hd590300_1 conda-forge brotli-bin 1.1.0 hd590300_1 conda-forge bx-python 0.10.0 py39h31164c1_0 bioconda bzip2 1.0.8 hd590300_5 conda-forge c-ares 1.26.0 hd590300_0 conda-forge c-compiler 1.7.0 hd590300_0 conda-forge ca-certificates 2024.2.2 hbcca054_0 conda-forge cairo 1.18.0 h3faef2a_0 conda-forge cd-hit 4.8.1 h43eeafb_9 bioconda certifi 2024.2.2 pyhd8ed1ab_0 conda-forge cffi 1.16.0 py39h7a31438_0 conda-forge cmake 3.28.3 hcfe8598_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge contourpy 1.2.0 py39h7633fee_0 conda-forge curl 8.5.0 hca28451_0 conda-forge cxx-compiler 1.7.0 h00ab1b0_0 conda-forge cycler 0.12.1 pyhd8ed1ab_0 conda-forge dbus 1.13.6 h5008d03_3 conda-forge diamond 2.1.9 h43eeafb_0 bioconda eigen 3.3.9 h4bd325d_1 conda-forge entrez-direct 16.2 he881be0_1 bioconda expat 2.5.0 hcb278e6_1 conda-forge font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge font-ttf-inconsolata 3.000 h77eed37_0 conda-forge font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge font-ttf-ubuntu 0.83 h77eed37_1 conda-forge fontconfig 2.14.2 h14ed4e7_0 conda-forge fonts-conda-ecosystem 1 0 conda-forge fonts-conda-forge 1 0 conda-forge fonttools 4.48.1 py39hd1e30aa_0 conda-forge freetype 2.12.1 h267a509_2 conda-forge future 0.18.3 pyhd8ed1ab_0 conda-forge gawk 5.3.0 ha916aea_0 conda-forge gcc 12.3.0 h8d2909c_2 conda-forge gcc_impl_linux-64 12.3.0 he2b93b0_5 conda-forge gcc_linux-64 12.3.0 h76fc315_2 conda-forge gettext 0.21.1 h27087fc_0 conda-forge gffutils 0.12 pyh7cba7a3_0 bioconda ggcaller 1.3.4 pypi_0 pypi glib 2.78.3 hfc55251_0 conda-forge glib-tools 2.78.3 hfc55251_0 conda-forge gmp 6.3.0 h59595ed_0 conda-forge graphite2 1.3.13 h58526e2_1001 conda-forge gst-plugins-base 1.22.9 h8e1006c_0 conda-forge gstreamer 1.22.9 h98fc4e7_0 conda-forge gxx 12.3.0 h8d2909c_2 conda-forge gxx_impl_linux-64 12.3.0 he2b93b0_5 conda-forge gxx_linux-64 12.3.0 h8a814eb_2 conda-forge harfbuzz 8.3.0 h3d44ed6_0 conda-forge hmmer 3.4 hdbdd923_0 bioconda icu 73.2 h59595ed_0 conda-forge importlib-metadata 7.0.1 pyha770c72_0 conda-forge importlib-resources 6.1.1 pyhd8ed1ab_0 conda-forge importlib_resources 6.1.1 pyhd8ed1ab_0 conda-forge intbitset 3.0.2 py39hd1e30aa_1 conda-forge joblib 1.3.2 pyhd8ed1ab_0 conda-forge kernel-headers_linux-64 2.6.32 he073ed8_16 conda-forge keyutils 1.6.1 h166bdaf_0 conda-forge kiwisolver 1.4.5 py39h7633fee_1 conda-forge krb5 1.21.2 h659d440_0 conda-forge lame 3.100 h166bdaf_1003 conda-forge lcms2 2.16 hb7c19ff_0 conda-forge ld_impl_linux-64 2.40 h41732ed_0 conda-forge lerc 4.0.0 h27087fc_0 conda-forge libblas 3.9.0 16_linux64_mkl conda-forge libboost 1.84.0 h6fcfa73_0 conda-forge libboost-devel 1.84.0 h00ab1b0_0 conda-forge libboost-headers 1.84.0 ha770c72_0 conda-forge libbrotlicommon 1.1.0 hd590300_1 conda-forge libbrotlidec 1.1.0 hd590300_1 conda-forge libbrotlienc 1.1.0 hd590300_1 conda-forge libcap 2.69 h0f662aa_0 conda-forge libcblas 3.9.0 16_linux64_mkl conda-forge libclang 15.0.7 default_hb11cfb5_4 conda-forge libclang13 15.0.7 default_ha2b6cf4_4 conda-forge libcups 2.3.3 h4637d8d_4 conda-forge libcurl 8.5.0 hca28451_0 conda-forge libdeflate 1.19 hd590300_0 conda-forge libedit 3.1.20191231 he28a2e2_2 conda-forge libev 4.33 hd590300_2 conda-forge libevent 2.1.12 hf998b51_1 conda-forge libexpat 2.5.0 hcb278e6_1 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libflac 1.4.3 h59595ed_0 conda-forge libgcc 7.2.0 h69d50b8_2 conda-forge libgcc-devel_linux-64 12.3.0 h8bca6fd_105 conda-forge libgcc-ng 13.2.0 h807b86a_5 conda-forge libgcrypt 1.10.3 hd590300_0 conda-forge libgfortran-ng 13.2.0 h69a702a_5 conda-forge libgfortran5 13.2.0 ha4646dd_5 conda-forge libglib 2.78.3 h783c2da_0 conda-forge libgomp 13.2.0 h807b86a_5 conda-forge libgpg-error 1.47 h71f35ed_0 conda-forge libhwloc 2.9.3 default_h554bfaf_1009 conda-forge libiconv 1.17 hd590300_2 conda-forge libidn2 2.3.7 hd590300_0 conda-forge libjpeg-turbo 3.0.0 hd590300_1 conda-forge liblapack 3.9.0 16_linux64_mkl conda-forge libllvm15 15.0.7 hb3ce162_4 conda-forge libnghttp2 1.58.0 h47da74e_1 conda-forge libnsl 2.0.1 hd590300_0 conda-forge libogg 1.3.4 h7f98852_1 conda-forge libopenblas 0.3.26 pthreads_h413a1c8_0 conda-forge libopus 1.3.1 h7f98852_1 conda-forge libpng 1.6.42 h2797004_0 conda-forge libpq 16.1 h33b98f1_7 conda-forge libprotobuf 3.19.6 h3eb15da_0 conda-forge libsanitizer 12.3.0 h0f45ef3_5 conda-forge libsndfile 1.2.2 hc60ed4a_1 conda-forge libsqlite 3.44.2 h2797004_0 conda-forge libssh2 1.11.0 h0841786_0 conda-forge libstdcxx-devel_linux-64 12.3.0 h8bca6fd_105 conda-forge libstdcxx-ng 13.2.0 h7e041cc_5 conda-forge libsystemd0 255 h3516f8a_0 conda-forge libtiff 4.6.0 ha9c0a0a_2 conda-forge libunistring 0.9.10 h7f98852_0 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libuv 1.46.0 hd590300_0 conda-forge libvorbis 1.3.7 h9c3ff4c_0 conda-forge libwebp-base 1.3.2 hd590300_0 conda-forge libxcb 1.15 h0b41bf4_0 conda-forge libxcrypt 4.4.36 hd590300_1 conda-forge libxkbcommon 1.6.0 hd429924_1 conda-forge libxml2 2.12.5 h232c23b_0 conda-forge libzlib 1.2.13 hd590300_5 conda-forge llvm-openmp 17.0.6 h4dfa4b3_0 conda-forge lz4-c 1.9.4 hcb278e6_0 conda-forge mafft 7.520 h031d066_3 bioconda make 4.3 hd18ef5c_1 conda-forge matplotlib 3.8.2 py39hf3d152e_0 conda-forge matplotlib-base 3.8.2 py39he9076e7_0 conda-forge mkl 2022.2.1 h84fe81f_16997 conda-forge mkl-devel 2022.2.1 ha770c72_16998 conda-forge mkl-include 2022.2.1 h84fe81f_16997 conda-forge mpfr 4.2.1 h9458935_0 conda-forge mpg123 1.32.4 h59595ed_0 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge mysql-common 8.0.33 hf1915f5_6 conda-forge mysql-libs 8.0.33 hca2cd23_6 conda-forge ncbi-vdb 3.0.10 hdbdd923_0 bioconda ncurses 6.4 h59595ed_2 conda-forge networkx 3.2.1 pyhd8ed1ab_0 conda-forge ninja 1.11.1 h924138e_0 conda-forge nspr 4.35 h27087fc_0 conda-forge nss 3.97 h1d7d5a4_0 conda-forge numpy 1.26.4 py39h474f0d3_0 conda-forge openblas 0.3.26 pthreads_h7a3da1a_0 conda-forge openjpeg 2.5.0 h488ebb8_3 conda-forge openssl 3.2.1 hd590300_0 conda-forge ossuuid 1.6.2 hf484d3e_1000 conda-forge packaging 23.2 pyhd8ed1ab_0 conda-forge pandas 2.2.0 py39hddac248_0 conda-forge patsy 0.5.6 pyhd8ed1ab_0 conda-forge pcre 8.45 h9c3ff4c_0 conda-forge pcre2 10.42 hcad00b1_0 conda-forge perl 5.22.0.1 0 conda-forge perl-app-cpanminus 1.7043 pl5.22.0_0 bioconda perl-archive-tar 2.18 pl5.22.0_2 bioconda perl-carp 1.38 pl5.22.0_0 bioconda perl-common-sense 3.74 0 bioconda perl-compress-raw-bzip2 2.069 1 bioconda perl-compress-raw-zlib 2.069 3 bioconda perl-data-dumper 2.161 pl5.22.0_0 bioconda perl-exporter 5.72 pl5.22.0_0 bioconda perl-exporter-tiny 0.042 1 bioconda perl-extutils-makemaker 7.24 pl5.22.0_1 bioconda perl-io-compress 2.069 pl5.22.0_2 bioconda perl-io-zlib 1.10 1 bioconda perl-json 2.90 1 bioconda perl-json-xs 2.34 0 bioconda perl-list-moreutils 0.428 pl5.22.0_0 bioconda perl-pathtools 3.73 h470a237_2 bioconda perl-scalar-list-utils 1.45 2 bioconda perl-test-more 1.001002 pl5.22.0_0 bioconda perl-threaded 5.32.1 hdfd78af_1 bioconda perl-uri 1.71 pl5.22.0_1 bioconda perl-xml-libxml 2.0124 0 bioconda perl-xml-namespacesupport 1.11 0 bioconda perl-xml-sax 0.99 0 bioconda perl-xml-sax-base 1.08 0 bioconda pillow 10.2.0 py39had0adad_0 conda-forge pip 24.0 pyhd8ed1ab_0 conda-forge pixman 0.43.2 h59595ed_0 conda-forge ply 3.11 py_1 conda-forge protobuf 3.19.6 py39h227be39_0 conda-forge pthread-stubs 0.4 h36c2ea0_1001 conda-forge pulseaudio-client 16.1 hb77b528_5 conda-forge pybind11 2.11.1 py39h7633fee_2 conda-forge pybind11-global 2.11.1 py39h7633fee_2 conda-forge pycparser 2.21 pyhd8ed1ab_0 conda-forge pyfaidx 0.8.1.1 pyhdfd78af_0 bioconda pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge pyqt 5.15.9 py39h52134e7_5 conda-forge pyqt5-sip 12.12.2 py39h3d6467e_5 conda-forge python 3.9.18 h0755675_1_cpython conda-forge python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge python-edlib 1.3.9 py39h1f90b4d_4 bioconda python-tzdata 2023.4 pyhd8ed1ab_0 conda-forge python-wget 3.2 py_0 conda-forge python_abi 3.9 4_cp39 conda-forge pytorch 1.10.2 cpu_py39h5e9ed0b_1 conda-forge pytorch-cpu 1.10.2 cpu_py39h718b53a_1 conda-forge pytz 2024.1 pyhd8ed1ab_0 conda-forge pyvcf3 1.0.3 pyhdfd78af_0 bioconda qt-main 5.15.8 h450f30e_18 conda-forge rapidnj 2.3.2 h4ac6f70_4 bioconda readline 8.2 h8228510_1 conda-forge rhash 1.4.4 hd590300_0 conda-forge scipy 1.12.0 py39h474f0d3_2 conda-forge seaborn 0.13.2 hd8ed1ab_0 conda-forge seaborn-base 0.13.2 pyhd8ed1ab_0 conda-forge setuptools 59.5.0 py39hf3d152e_0 conda-forge simplejson 3.19.2 py39hd1e30aa_0 conda-forge sip 6.7.12 py39h3d6467e_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge sleef 3.5.1 h9b69904_2 conda-forge snp-sites 2.5.1 he4a0461_4 bioconda statsmodels 0.14.1 py39h44dd56e_0 conda-forge sysroot_linux-64 2.12 he073ed8_16 conda-forge tbb 2021.11.0 h00ab1b0_1 conda-forge tbb-devel 2021.11.0 h5ccd973_1 conda-forge tk 8.6.13 noxft_h4845f30_101 conda-forge toml 0.10.2 pyhd8ed1ab_0 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge tornado 6.3.3 py39hd1e30aa_1 conda-forge tqdm 4.66.1 pyhd8ed1ab_0 conda-forge typing_extensions 4.9.0 pyha770c72_0 conda-forge tzdata 2024a h0c530f3_0 conda-forge uncertainties 3.1.7 pyhd8ed1ab_0 conda-forge unicodedata2 15.1.0 py39hd1e30aa_0 conda-forge wget 1.20.3 ha35d2d1_1 conda-forge wheel 0.42.0 pyhd8ed1ab_0 conda-forge xcb-util 0.4.0 hd590300_1 conda-forge xcb-util-image 0.4.0 h8ee46fc_1 conda-forge xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge xcb-util-renderutil 0.3.9 hd590300_1 conda-forge xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge xkeyboard-config 2.41 hd590300_0 conda-forge xorg-kbproto 1.0.7 h7f98852_1002 conda-forge xorg-libice 1.1.1 hd590300_0 conda-forge xorg-libsm 1.2.4 h7391055_0 conda-forge xorg-libx11 1.8.7 h8ee46fc_0 conda-forge xorg-libxau 1.0.11 hd590300_0 conda-forge xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge xorg-libxext 1.3.4 h0b41bf4_2 conda-forge xorg-libxrender 0.9.11 hd590300_0 conda-forge xorg-renderproto 0.11.1 h7f98852_1002 conda-forge xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge xorg-xproto 7.0.31 h7f98852_1007 conda-forge xz 5.2.6 h166bdaf_0 conda-forge zipp 3.17.0 pyhd8ed1ab_0 conda-forge zlib 1.2.13 hd590300_5 conda-forge zstd 1.5.5 hfc55251_0 conda-forge