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Add ambiguous genotypes in VCF output #5

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johnlees opened this issue Feb 7, 2023 · 1 comment
Open

Add ambiguous genotypes in VCF output #5

johnlees opened this issue Feb 7, 2023 · 1 comment
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enhancement New feature or request not planned This will not be worked on

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johnlees commented Feb 7, 2023

Currently any non-ACGT IUPAC codes are written as an 'N'. It would be possible to keep the information by writing out multiple output genotypes for a sample, with equal probabilities.

Not yet sure whether this will be a much used feature, and would take a little effort to implement.
@johnlees johnlees added the enhancement New feature or request label Feb 7, 2023
@johnlees johnlees self-assigned this Feb 7, 2023
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Not going to do this unless a few people ask for it

@johnlees johnlees added the not planned This will not be worked on label Jul 11, 2023
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