From 658edf70deb607585dc8dde1b84dd35980261eee Mon Sep 17 00:00:00 2001 From: Robert Petit Date: Sat, 23 Mar 2024 12:44:52 -0600 Subject: [PATCH] update all tests action --- .github/workflows/all-bactopia-tests.yml | 11 ++++------- 1 file changed, 4 insertions(+), 7 deletions(-) diff --git a/.github/workflows/all-bactopia-tests.yml b/.github/workflows/all-bactopia-tests.yml index 3a487871..3adac5d5 100644 --- a/.github/workflows/all-bactopia-tests.yml +++ b/.github/workflows/all-bactopia-tests.yml @@ -1,9 +1,6 @@ name: All Bactopia Tests on: workflow_dispatch - #schedule: - # At 01:30 on Monday and Thursday - #- cron: '30 1 * * 1,4' jobs: bactopia-tests: @@ -14,7 +11,7 @@ jobs: steps: - name: Checkout bactopia/bactopia - uses: actions/checkout@v2 + uses: actions/checkout@v4 with: path: ${{ github.run_id }}/bactopia @@ -30,7 +27,7 @@ jobs: - name: Conda Profile run: | - source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh + source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh conda activate bactopia-ci cd ${{ env.BACTOPIA_WORKSPACE }} ls modules/local/bactopia | xargs -I {} -P 10 -n 1\ @@ -39,7 +36,7 @@ jobs: - name: Docker Profile run: | - source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh + source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh conda activate bactopia-ci cd ${{ env.BACTOPIA_WORKSPACE }} ls modules/local/bactopia | xargs -I {} -P 10 -n 1\ @@ -48,7 +45,7 @@ jobs: - name: Singularity Profile run: | - source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh + source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh conda activate bactopia-ci cd ${{ env.BACTOPIA_WORKSPACE }} ls modules/local/bactopia | xargs -I {} -P 10 -n 1\