diff --git a/.github/workflows/all-bactopia-tests.yml b/.github/workflows/all-bactopia-tests.yml
deleted file mode 100644
index 3adac5d5..00000000
--- a/.github/workflows/all-bactopia-tests.yml
+++ /dev/null
@@ -1,73 +0,0 @@
-name: All Bactopia Tests
-
-on: workflow_dispatch
-
-jobs:
-  bactopia-tests:
-    runs-on: self-hosted
-    defaults:
-      run:
-        shell: bash -l {0}
-
-    steps:
-      - name: Checkout bactopia/bactopia
-        uses: actions/checkout@v4
-        with:
-          path: ${{ github.run_id }}/bactopia
-
-      - name: Setup ENV variables
-        run: |
-          echo "BACTOPIA_CI=/data/storage/bactopia-ci" >> $GITHUB_ENV
-          echo "BACTOPIA_CONDA=/data/storage/bactopia-ci/envs/conda" >> $GITHUB_ENV
-          echo "BACTOPIA_SINGULARITY=/data/storage/bactopia-ci/envs/singularity" >> $GITHUB_ENV
-          echo "BACTOPIA_TESTS=/data/storage/bactopia-ci/bactopia-tests/data" >> $GITHUB_ENV
-          echo "BACTOPIA_WORKSPACE=${GITHUB_WORKSPACE}/${{ github.run_id }}/bactopia" >> $GITHUB_ENV
-          echo "BACTOPIA_TMP=/data/storage/bactopia-tmp/${{ github.run_id }}" >> $GITHUB_ENV
-          mkdir "/data/storage/bactopia-tmp/${{ github.run_id }}"
-
-      - name: Conda Profile
-        run: |
-          source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh
-          conda activate bactopia-ci
-          cd ${{ env.BACTOPIA_WORKSPACE }}
-          ls modules/local/bactopia | xargs -I {} -P 10 -n 1\
-              bash -c 'BACTOPIA_ARGS="-profile test --condadir ${{ env.BACTOPIA_CONDA }} --test_data_dir ${{ env.BACTOPIA_TESTS }}" TMPDIR=${{ env.BACTOPIA_TMP }} \
-                       pytest --wt 10 --symlink --kwdof -o "testpaths=tests modules/local/bactopia" --git-aware --tag {}'
-
-      - name: Docker Profile
-        run: |
-          source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh
-          conda activate bactopia-ci
-          cd ${{ env.BACTOPIA_WORKSPACE }}
-          ls modules/local/bactopia | xargs -I {} -P 10 -n 1\
-              bash -c 'BACTOPIA_ARGS="-profile test,docker --test_data_dir ${{ env.BACTOPIA_TESTS }}" TMPDIR=${{ env.BACTOPIA_TMP }} \
-                       pytest --wt 10 --symlink --kwdof -o "testpaths=tests modules/local/bactopia" --git-aware --tag {}'
-
-      - name: Singularity Profile
-        run: |
-          source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh
-          conda activate bactopia-ci
-          cd ${{ env.BACTOPIA_WORKSPACE }}
-          ls modules/local/bactopia | xargs -I {} -P 10 -n 1\
-              bash -c 'BACTOPIA_ARGS="-profile test,singularity --singularity_cache ${{ env.BACTOPIA_SINGULARITY }} --test_data_dir ${{ env.BACTOPIA_TESTS }}" TMPDIR=${{ env.BACTOPIA_TMP }} \
-                       pytest --wt 10 --symlink --kwdof -o "testpaths=tests modules/local/bactopia" --git-aware --tag {}'
-
-      - name: Upload logs on failure
-        if: failure()
-        uses: actions/upload-artifact@v2
-        with:
-          name: logs-bactopia
-          path: |
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/log.out
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/log.err
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/.nextflow.log
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/work/**/*.log
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/work/**/*.err
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/work/**/*.out
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/work/**/*stderr.txt
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/work/**/*stdout.txt
-            ${{ env.BACTOPIA_TMP }}/pytest_workflow_*/*/work/**/*versions.yml
-           
-      - name: Cleanup
-        if: always()
-        run: rm -rf ${GITHUB_WORKSPACE}/${{ github.run_id }} ${{ env.BACTOPIA_TMP }}
diff --git a/.github/workflows/all-bactopia-tool-tests.yml b/.github/workflows/all-bactopia-tool-tests.yml
index e0cf4ac3..62473b8b 100644
--- a/.github/workflows/all-bactopia-tool-tests.yml
+++ b/.github/workflows/all-bactopia-tool-tests.yml
@@ -1,4 +1,4 @@
-name: All Bactopia Tool Tests
+name: All Bactopia Tests
 
 on: workflow_dispatch
   #schedule:
diff --git a/CHANGELOG.md b/CHANGELOG.md
index c92a5bf5..10be2cdd 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -9,7 +9,10 @@ description: A full list of Bactopia releases and a description of the changes.
 ### `Added`
 
 - Updated `bactopia-assembler` to include updated Medaka models
+- profile for `arcc_hawk`
 - TB Profiler results are now merged with `collate` command
+- sample name to plasmidfinder results
+- support config files from nf-core/configs
 - bump program versions in modules
     - `abritamr`: 1.0.14 -> 1.0.17
     - `bactopia-teton`: 1.0.1 -> 1.0.2
@@ -35,6 +38,11 @@ description: A full list of Bactopia releases and a description of the changes.
 - extra space in RGI container image name
 - sourmash version STDERR not parsed out
 - FASTQC writing to /tmp dir on HPC when non-readable
+- abricate and ariba not using output subdirectory
+- nextflow tower typos @iferres
+- phispy not working with Bakta genbank files
+- missed check of `--download_bakta` param in main workflow
+- quast not working when estimated genome size is 0
 
 ## v3.0.0 bactopia/bactopia "Black Cat and Brown Dog" - 2023/09/11
 
diff --git a/nextflow.config b/nextflow.config
index beee60f0..d9680250 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -92,12 +92,13 @@ try {
     System.err.println("WARNING: Could not load nf-core/config profiles: ${params.custom_config_base}/nfcore_custom.config")
 }
 
+// NOTE: The following section will only be needed if a bactopia specific profile is added to nf-core/configs
 // Load Bactopia custom profiles from different institutions.
-try {
-    includeConfig "${params.custom_config_base}/pipeline/bactopia.config"
-} catch (Exception e) {
-    System.err.println("WARNING: Could not load nf-core/config/bactopia profiles: ${params.custom_config_base}/pipeline/bactopia.config")
-}
+//try {
+//    includeConfig "${params.custom_config_base}/pipeline/bactopia.config"
+//} catch (Exception e) {
+//    System.err.println("WARNING: Could not load nf-core/config/bactopia profiles: ${params.custom_config_base}/pipeline/bactopia.config")
+//}
 
 includeConfig "conf/profiles.config"