From b813b2d625971b29f6f318b822d66766750237af Mon Sep 17 00:00:00 2001 From: Robert Petit Date: Sat, 23 Mar 2024 12:50:27 -0600 Subject: [PATCH] update all tests action --- .github/workflows/all-bactopia-tool-tests.yml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/all-bactopia-tool-tests.yml b/.github/workflows/all-bactopia-tool-tests.yml index 79990864..e0cf4ac3 100644 --- a/.github/workflows/all-bactopia-tool-tests.yml +++ b/.github/workflows/all-bactopia-tool-tests.yml @@ -14,7 +14,7 @@ jobs: steps: - name: Checkout bactopia/bactopia - uses: actions/checkout@v2 + uses: actions/checkout@v4 with: path: ${{ github.run_id }}/bactopia @@ -31,7 +31,7 @@ jobs: - name: Singularity Profile run: | - source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh + source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh conda activate bactopia-ci cd ${{ env.BACTOPIA_WORKSPACE }} ls subworkflows/local/ | grep -v -E "teton" | xargs -I {} -P 20 \ @@ -40,7 +40,7 @@ jobs: - name: Docker Profile run: | - source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh + source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh conda activate bactopia-ci cd ${{ env.BACTOPIA_WORKSPACE }} ls subworkflows/local/ | grep -v -E "teton" | xargs -I {} -P 20 \ @@ -49,7 +49,7 @@ jobs: - name: Conda Profile run: | - source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh + source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh conda activate bactopia-ci conda clean --all -y cd ${{ env.BACTOPIA_WORKSPACE }}