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@phenoscape @NESCent @nexml @phylotastic @obophenotype @monarch-initiative @geneontology @owlcollab @phenopackets @INCATools @NCATS-Tangerine

Pinned repositories

  1. image-depictions-view

    Protégé plugin which displays image depictions of classes and individuals.

    Java 1

  2. clique-merge

    SPARQL-based clique merge for Monarch


  3. obo-actions

    Protégé menu actions implementing OBO ontology editing conventions.


  4. obo-qc-shapes

    SHACL shapes for OBO ontology quality control

  5. shacl-runner

    Prototype of validation checks for OBO ontologies using the Shapes Constraint Language (SHACL)


  6. dosdp-scala

    Generate a SPARQL query matching a DOSDP design pattern

    Scala 1

661 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

February 2017

Created a pull request in geneontology/minerva that received 3 comments

Added command for running SPARQL update on an offline database.

This would be run after first stopping the Minerva server. Then you can use Minerva to update the journal by specifying a file containing a SPARQL …

Created an issue in geneontology/noctua that received 6 comments

Annotation of inferred edges (new UI and axiom management)

An idea developed in GPAD inference discussion with @ukemi and @vanaukenk: add a panel to Noctua containing a table of potential annotations (i.e. …

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