/breseq

breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R. More information at
  1. C++ 67.1%
  2. GAP 21.2%
  3. Perl 6.1%
  4. M4 1.6%
  5. HTML 1.0%
  6. R 1.0%
  7. Other 2.0%
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@jeffreybarrick
jeffreybarrick Updated code identifying executable and data paths.
Latest commit 15db781 Oct 12, 2018
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Type Name Latest commit message Commit time
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aux_build/m4 Changed datadir in breseq to be relative to binbir so as preparation … Mar 6, 2015
extern updates to Makefiles to get proper library linking Oct 25, 2016
ports Updated to v0.24, but not ready for release; changed junctions to pre… Aug 6, 2013
src Updated code identifying executable and data paths. Oct 12, 2018
tests Fixed HTML output issues for mutations overlapping multiple genes Aug 2, 2018
.gitignore Removed file that shouldn't be tracked from VCS system Jun 8, 2017
AUTHORS Updated to v0.24, but not ready for release; changed junctions to pre… Aug 6, 2013
COPYING Updated to v0.24, but not ready for release; changed junctions to pre… Aug 6, 2013
ChangeLog Update Changelog Oct 3, 2018
DEVELOPER Updated to v0.24, but not ready for release; changed junctions to pre… Aug 6, 2013
LICENSE first try at binary production script; incremented version to 0.24d Mar 8, 2015
Makefile.am Added option for long-* tests with make test-long and make clean oper… Nov 30, 2017
NEWS Updated to v0.24, but not ready for release; changed junctions to pre… Aug 6, 2013
README Updating docs Mar 20, 2015
README-BINARY Fixed binary dist test to clean itself before running so that it can … Mar 13, 2015
README.md edited readme down to link Nov 23, 2015
binarydist.sh Incremented version to 0.33.0. Clean up libunwind in binary builds Jul 18, 2018
bootstrap.sh Updated to v0.24, but not ready for release; changed junctions to pre… Aug 6, 2013
configure.ac Update Changelog Oct 3, 2018

README.md