Typer error when trying to run cvglmnet

[YSanchezAraujo]

If I create some dummy data:

X = np.random.random((200,10)).astype(scipy.float64)
y = np.zeros(200)
for i in range(0, 200, 2):
    y[i] = 1
y = y.astype(scipy.float64)

then try running cvglment:

fit = cvglmnet(x = X, y = y, family = 'binomial')

I get:

---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-3-8dab0d126aa7> in <module>()
----> 1 fit = cvglmnet(x = X, y = y, family = 'binomial')
      2 #scipy.tile(scipy.arange(4), [1, scipy.floor(12/4.)])

/om/user/ysa/miniconda3/envs/py35/lib/python3.5/site-packages/glmnet_python/cvglmnet.py in cvglmnet(x, y, family, ptype, nfolds, foldid, parallel, keep, grouped, **options)
    258 
    259     if len(foldid) == 0:
--> 260         ma = scipy.tile(scipy.arange(nfolds), [1, scipy.floor(nobs/nfolds)])
    261        mb = scipy.arange(scipy.mod(nobs, nfolds))

/om/user/ysa/miniconda3/envs/py35/lib/python3.5/site-packages/numpy/lib/shape_base.py in tile(A, reps)
    878                 c = c.reshape(-1, n).repeat(nrep, 0)
    879             n //= dim_in
--> 880     return c.reshape(shape_out)

TypeError: 'numpy.float64' object cannot be interpreted as an integer

It seems the problem is in the line:

ma = scipy.tile(scipy.arange(nfolds), [1, scipy.floor(nobs/nfolds)])

If instead you change that to:

ma = scipy.tile(scipy.arange(nfolds), [1, int(scipy.floor(nobs/nfolds))])

The problem goes away.

[hanfang]

Hi there,
Sorry for the delay. Has been super busy lately. Will find a chance to visit this in about two weeks. Thanks.
Han

[bbalasub1]

Hi, Thanks! Can you change and do a merge request, and I will pull it into the master? Bala

…

On Fri, Apr 14, 2017 at 10:15 PM, Yoel Sanchez Araujo < ***@***.***> wrote: If I create some dummy data: X = np.random.random((200,10)).astype(scipy.float64) y = np.zeros(200)for i in range(0, 200, 2): y[i] = 1 y = y.astype(scipy.float64) then try running cvglment: fit = cvglmnet(x = X, y = y, family = 'binomial') I get: ---------------------------------------------------------------------------TypeError Traceback (most recent call last)<ipython-input-3-8dab0d126aa7> in <module>()----> 1 fit = cvglmnet(x = X, y = y, family = 'binomial') 2 #scipy.tile(scipy.arange(4), [1, scipy.floor(12/4.)]) /om/user/ysa/miniconda3/envs/py35/lib/python3.5/site-packages/glmnet_python/cvglmnet.py in cvglmnet(x, y, family, ptype, nfolds, foldid, parallel, keep, grouped, **options) 258 259 if len(foldid) == 0:--> 260 ma = scipy.tile(scipy.arange(nfolds), [1, scipy.floor(nobs/nfolds)]) 261 mb = scipy.arange(scipy.mod(nobs, nfolds)) /om/user/ysa/miniconda3/envs/py35/lib/python3.5/site-packages/numpy/lib/shape_base.py in tile(A, reps) 878 c = c.reshape(-1, n).repeat(nrep, 0) 879 n //= dim_in--> 880 return c.reshape(shape_out) TypeError: 'numpy.float64' object cannot be interpreted as an integer It seems the problem is in the line: ma = scipy.tile(scipy.arange(nfolds), [1, scipy.floor(nobs/nfolds)]) If instead you change that to: ma = scipy.tile(scipy.arange(nfolds), [1, int(scipy.floor(nobs/nfolds))]) The problem goes away. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#6>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AKpDE49ogcNRmKpeHKt_3bjexz_scUtuks5rwChIgaJpZM4M-OTm> .

[mzhao94]

Has this already been pulled into the master branch? I'm getting the same error.

Thanks.

[davidarteta]

I am having same error. Asked about it in Stack overflow:
[https://stackoverflow.com/questions/54671752/why-does-glmnet-py-throw-a-typeerror-at-cvglmnet-when-i-provide-floats-if-glmne]

[bbalasub1]

This seems to be specific to OS/version. I tried the same problem after a fresh install on Ubuntu/18.04 and could not reproduce it.

[liyi-1989]

I got the same error on Mac.