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1. discvr

   DISCVR is an extension to LabKey Server designed to help labs manage data

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2. discvr-seq

   DISCVR-Seq is a collection of tools to analyze next-generation sequence data

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3. gatk

   Forked from broadgsa/gatk

   GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

   Java

4. picard

   Forked from broadinstitute/picard

   A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

   Java

5. htsjdk

   Forked from samtools/htsjdk

   A Java API for high-throughput sequencing data (HTS) formats.

   Java

6. STARTapp

   Forked from jminnier/STARTapp

   The START App: R Shiny Transcriptome Analysis Resource Tool

   HTML