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#6 Assignment 2
Luka Trkla edited this page Mar 16, 2022
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| Start Date | End Date | Time Estimate | Time Taken |
| 2022 Mar 14 | 2022 Mar 2022 | 7 Hours | 6 Hours 40 Min. |
- To perform a differential gene expression analysis (& preliminary over-representation analysis) on the data set we filtered for outliers and normalized in A1.
- Worked through Week 6 & Week 8 material to be prepared for the assignment.
- Worked through the assignment and submitted it (hopefully) in the proper formatting.
- Remainder of Procedure is outlined in the assignment submission. Herein,
- Learned that EdgeR offers an analysis package for RNASeq data that offers different models you can use for differential
- Annotation data is bountiful, but it is of paramount importance to ensure that the annotation data is up to date, otherwise
- Benjamini-Hochberg Procedure allows for us to conveniently bypass problems with false positives that we have to factor in as we increase the number of hypothesis' we analyze.
- On to Assignment 3, and probably should look into significance of dispersion, as it is a concept I am not entirely comfortable with.