Julia utilities to process and save results from BioMedical databases/APIs.
BioServices.jl (part of BioJulia) provides the basic interface to some of the APIs, while BioMedQuery helps parse and save results into MySQL, SQLite, DataFrames, CSV etc.
Supported APIs include:
National Library of Medicine (NLM)
- Entrez Programming Utilities (E-Utilities)
- Unified Medical Language System (UMLS)
- Clinical Trials (clinicaltrials.gov)
- MEDLINE (PubMed MEDLINE)
BioMedQuery is a registered package. To install the latest stable version, use the package manager.
The current stable version is compatible with julia v0.7. Use BioMedQuery v0.5.0 for compatibility with julia v0.6.
To checkout the current master (development) branch: