Julia utilities to interact with BioMedical Databases and APIs
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README.md

BioMedQuery

Latest Release MIT license DOI Lifecycle

Description

Julia utilities to process and save results from BioMedical databases/APIs.

BioServices.jl (part of BioJulia) provides the basic interface to some of the APIs, while BioMedQuery helps parse and save results into MySQL, SQLite, DataFrames, CSV etc.

Supported APIs include:

National Library of Medicine (NLM)

Installation

BioMedQuery is a registered package. To install the latest stable version, use the package manager.

using Pkg
Pkg.add("BioMedQuery")

To use the latest development version:

using Pkg
Pkg.add("BioMedQuery#master")

To checkout the latest development version:

using Pkg
Pkg.dev("BioMedQuery")

Testing

BioMedQuery is tested against Julia 0.7 and current 1.X on Linux, and OS X.

Latest CI Build
codecov

Documentation

Stable Latest Examples
Stable documentation Latest documentation nbviewer