From 120590bb599ffc01764f5a4daa9acb81c8a1ff4d Mon Sep 17 00:00:00 2001 From: Matthias De Smet Date: Mon, 15 Jul 2019 13:31:01 +0200 Subject: [PATCH] update genome configs for VEP97 --- config/genomes/BDGP6-resources.yaml | 4 ++-- config/genomes/GRCh37-resources.yaml | 4 ++-- config/genomes/GRCz11-resources.yaml | 4 ++-- config/genomes/Sscrofa11.1-resources.yaml | 4 ++-- config/genomes/WBcel235-resources.yaml | 4 ++-- config/genomes/canFam3-resources.yaml | 4 ++-- config/genomes/dm3-resources.yaml | 4 ++-- config/genomes/galGal4-resources.yaml | 4 ++-- config/genomes/hg19-resources.yaml | 4 ++-- config/genomes/hg38-noalt-resources.yaml | 4 ++-- config/genomes/hg38-resources.yaml | 4 ++-- config/genomes/mm10-resources.yaml | 4 ++-- config/genomes/rn6-resources.yaml | 4 ++-- config/genomes/sacCer3-resources.yaml | 4 ++-- config/genomes/xenTro3-resources.yaml | 4 ++-- 15 files changed, 30 insertions(+), 30 deletions(-) diff --git a/config/genomes/BDGP6-resources.yaml b/config/genomes/BDGP6-resources.yaml index 768bc31eb..b261cc225 100644 --- a/config/genomes/BDGP6-resources.yaml +++ b/config/genomes/BDGP6-resources.yaml @@ -1,5 +1,5 @@ -version: 16 +version: 17 aliases: - ensembl: drosophila_melanogaster_vep_96_BDGP6 + ensembl: drosophila_melanogaster_vep_97_BDGP6 snpeff: BDGP5.75 diff --git a/config/genomes/GRCh37-resources.yaml b/config/genomes/GRCh37-resources.yaml index 2b1bd4238..6d03f2233 100644 --- a/config/genomes/GRCh37-resources.yaml +++ b/config/genomes/GRCh37-resources.yaml @@ -1,9 +1,9 @@ -version: 50 +version: 51 aliases: human: true snpeff: GRCh37.75 - ensembl: homo_sapiens_merged_vep_96_GRCh37 + ensembl: homo_sapiens_merged_vep_97_GRCh37 variation: dbsnp: ../variation/dbsnp-151.vcf.gz diff --git a/config/genomes/GRCz11-resources.yaml b/config/genomes/GRCz11-resources.yaml index 1082ff468..65d03d7d5 100644 --- a/config/genomes/GRCz11-resources.yaml +++ b/config/genomes/GRCz11-resources.yaml @@ -1,5 +1,5 @@ -version: 4 +version: 5 aliases: - ensembl: danio_rerio_vep_96_GRCz11 + ensembl: danio_rerio_vep_97_GRCz11 #snpeff: diff --git a/config/genomes/Sscrofa11.1-resources.yaml b/config/genomes/Sscrofa11.1-resources.yaml index 30dbb11c6..b72dcfe66 100644 --- a/config/genomes/Sscrofa11.1-resources.yaml +++ b/config/genomes/Sscrofa11.1-resources.yaml @@ -1,5 +1,5 @@ -version: 4 +version: 5 aliases: - ensembl: sus_scrofa_vep_96_Sscrofa11.1 + ensembl: sus_scrofa_vep_97_Sscrofa11.1 #snpeff: diff --git a/config/genomes/WBcel235-resources.yaml b/config/genomes/WBcel235-resources.yaml index 3370ba2e6..a5186439b 100644 --- a/config/genomes/WBcel235-resources.yaml +++ b/config/genomes/WBcel235-resources.yaml @@ -1,5 +1,5 @@ -version: 15 +version: 16 aliases: - ensembl: caenorhabditis_elegans_vep_96_WBcel235 + ensembl: caenorhabditis_elegans_vep_97_WBcel235 snpeff: WBcel235.86 diff --git a/config/genomes/canFam3-resources.yaml b/config/genomes/canFam3-resources.yaml index f32f7d297..62411d8b0 100644 --- a/config/genomes/canFam3-resources.yaml +++ b/config/genomes/canFam3-resources.yaml @@ -1,7 +1,7 @@ -version: 22 +version: 23 aliases: - ensembl: canis_familiaris_vep_96_CanFam3.1 + ensembl: canis_familiaris_vep_97_CanFam3.1 snpeff: CanFam3.1.86 variation: diff --git a/config/genomes/dm3-resources.yaml b/config/genomes/dm3-resources.yaml index 768bc31eb..b261cc225 100644 --- a/config/genomes/dm3-resources.yaml +++ b/config/genomes/dm3-resources.yaml @@ -1,5 +1,5 @@ -version: 16 +version: 17 aliases: - ensembl: drosophila_melanogaster_vep_96_BDGP6 + ensembl: drosophila_melanogaster_vep_97_BDGP6 snpeff: BDGP5.75 diff --git a/config/genomes/galGal4-resources.yaml b/config/genomes/galGal4-resources.yaml index 173944077..f338104d1 100644 --- a/config/genomes/galGal4-resources.yaml +++ b/config/genomes/galGal4-resources.yaml @@ -1,5 +1,5 @@ -version: 11 +version: 12 aliases: - ensembl: gallus_gallus_vep_96_Galgal4 + ensembl: gallus_gallus_vep_97_Galgal4 snpeff: Galgal4.75 diff --git a/config/genomes/hg19-resources.yaml b/config/genomes/hg19-resources.yaml index 8931f077a..2de3d8147 100644 --- a/config/genomes/hg19-resources.yaml +++ b/config/genomes/hg19-resources.yaml @@ -1,9 +1,9 @@ -version: 52 +version: 53 aliases: human: true snpeff: GRCh37.75 - ensembl: homo_sapiens_merged_vep_96_GRCh37 + ensembl: homo_sapiens_merged_vep_97_GRCh37 variation: dbsnp: ../variation/dbsnp-151.vcf.gz diff --git a/config/genomes/hg38-noalt-resources.yaml b/config/genomes/hg38-noalt-resources.yaml index a6ed3c211..d8dd3cd3a 100644 --- a/config/genomes/hg38-noalt-resources.yaml +++ b/config/genomes/hg38-noalt-resources.yaml @@ -1,9 +1,9 @@ -version: 26 +version: 27 aliases: human: true snpeff: GRCh38.86 - ensembl: homo_sapiens_merged_vep_96_GRCh38 + ensembl: homo_sapiens_merged_vep_97_GRCh38 variation: dbsnp: ../variation/dbsnp-151.vcf.gz diff --git a/config/genomes/hg38-resources.yaml b/config/genomes/hg38-resources.yaml index 8b1b8a3f3..85bcf57a9 100644 --- a/config/genomes/hg38-resources.yaml +++ b/config/genomes/hg38-resources.yaml @@ -1,9 +1,9 @@ -version: 37 +version: 38 aliases: human: true snpeff: GRCh38.86 - ensembl: homo_sapiens_merged_vep_96_GRCh38 + ensembl: homo_sapiens_merged_vep_97_GRCh38 variation: dbsnp: ../variation/dbsnp-151.vcf.gz diff --git a/config/genomes/mm10-resources.yaml b/config/genomes/mm10-resources.yaml index ef4a14a80..d5b853ddc 100644 --- a/config/genomes/mm10-resources.yaml +++ b/config/genomes/mm10-resources.yaml @@ -1,8 +1,8 @@ -version: 29 +version: 30 aliases: snpeff: GRCm38.86 - ensembl: mus_musculus_vep_96_GRCm38 + ensembl: mus_musculus_vep_97_GRCm38 variation: dbsnp: ../variation/mm10-dbSNP-2013-09-12.vcf.gz diff --git a/config/genomes/rn6-resources.yaml b/config/genomes/rn6-resources.yaml index 7036f2214..495cdbb6c 100644 --- a/config/genomes/rn6-resources.yaml +++ b/config/genomes/rn6-resources.yaml @@ -1,7 +1,7 @@ -version: 14 +version: 15 aliases: - ensembl: rattus_norvegicus_vep_96_Rnor_6.0 + ensembl: rattus_norvegicus_vep_97_Rnor_6.0 snpeff: Rnor_6.0.86 rnaseq: transcripts: ../rnaseq/ref-transcripts.gtf diff --git a/config/genomes/sacCer3-resources.yaml b/config/genomes/sacCer3-resources.yaml index 2f0846420..f51e6a93c 100644 --- a/config/genomes/sacCer3-resources.yaml +++ b/config/genomes/sacCer3-resources.yaml @@ -1,7 +1,7 @@ -version: 18 +version: 19 aliases: - ensembl: saccharomyces_cerevisiae_vep_96_R64-1-1 + ensembl: saccharomyces_cerevisiae_vep_97_R64-1-1 snpeff: R64-1-1.86 rnaseq: transcripts: ../rnaseq/ref-transcripts.gtf diff --git a/config/genomes/xenTro3-resources.yaml b/config/genomes/xenTro3-resources.yaml index 03222369d..94f735332 100644 --- a/config/genomes/xenTro3-resources.yaml +++ b/config/genomes/xenTro3-resources.yaml @@ -1,5 +1,5 @@ -version: 17 +version: 18 aliases: - ensembl: xenopus_tropicalis_vep_96_JGI_4.2 + ensembl: xenopus_tropicalis_vep_97_JGI_4.2 snpeff: JGI_4.2.86