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SEQ and QUAL are of different length #1639
I'm getting the error below while running pipeline. Is there any practical way to debug this? I guess the problem might be with the files themselves but they are huge....
[fputs] Broken pipe
Sorry about the problem, we'd likely need more information about your run to be able to debug this. It's typically due to some sort of memory issue during the run. If you're using 0.9.9 the latest development version has some fixes to try and improve resource usage during the alignment process and also does automatic splitting of alignments for giant BAM files to avoid problems. If you're already using the latest development, a full traceback and understanding of the sample YAML you're using could help us try to provide more helpful information.