BC Cancer Agency Canada's Michael Smith Genome Sciences Centre

🐳 Genomics Research Container Architecture

Long Interval Nucleotide K-mer Scaffolder

smith-waterman alignment visualization

Scaffold genome sequence assemblies using 10x Genomics data

Targeted analysis of alternative polyadenylation of candidate genes with RNA-Seq data

Create Bloom filters for a given reference and then to categorize sequences

🔬 Assemble large genomes using short reads

Merging, Annotation, Validation, and Illustration of Structural variants

🔬 Bioinformatics Technology Lab of the Genome Sciences Centre

The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.

⛓ Correct misassemblies using linked reads

de novo targeted gene assembly

This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa

Nanopore sequence read simulator

Post Assembly Variants Finder

Targeted ASsembly on the Cloud

🌺 fast and memory-efficient de novo assembler for bulk and single cell RNA-seq data

Scaffold genome assemblies with 10x Genomics Chromium reads

ntHash: recursive nucleotide hashing

ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads

RAILS and Cobbler

Estimating k-mer coverage histogram of genomics data

GraphViz scripts

Finding putative exons and constructing splicegraphs using Trans-ABySS contigs

command line interface for ggplot

de novo assembly of RNA-seq data using ABySS

A pipeline for running rsem analysis on thousands of samples

🍼 Assemble the Genome in a Bottle sequencing data