@bcgsc

BC Cancer Agency Canada's Michael Smith Genome Sciences Centre

Sequencing centre for genomics and bioinformatics research

Pinned repositories

  1. abyss

    πŸ”¬ Assemble large genomes using short reads

    C++ 139 64

  2. biobloom

    Create Bloom filters for a given reference and then to categorize sequences

    C++ 35 8

  3. transabyss

    de novo assembly of RNA-seq data using ABySS

    Python 11 3

  4. arcs

    Scaffold genome sequence assemblies using 10x Genomics data

    C++ 33 8

  5. ntHash

    ntHash: recursive nucleotide hashing

    C++ 21 2

  6. ntCard

    Estimating k-mer coverage histogram of genomics data

    C++ 33 2

  • 🐳 Genomics Research Container Architecture

    R 5 3 GPL-3.0 Updated Aug 15, 2018
  • Long Interval Nucleotide K-mer Scaffolder

    Perl 24 8 GPL-3.0 Updated Aug 13, 2018
  • smith-waterman alignment visualization

    Python 1 1 GPL-3.0 Updated Aug 7, 2018
  • Scaffold genome sequence assemblies using 10x Genomics data

    C++ 33 8 Updated Aug 2, 2018
  • Targeted analysis of alternative polyadenylation of candidate genes with RNA-Seq data

    Python Updated Aug 2, 2018
  • Create Bloom filters for a given reference and then to categorize sequences

    C++ 35 8 1 issue needs help Updated Aug 2, 2018
  • πŸ”¬ Assemble large genomes using short reads

    C++ 139 64 Updated Jul 31, 2018
  • Merging, Annotation, Validation, and Illustration of Structural variants

    Python 21 2 Updated Jul 30, 2018
  • πŸ”¬ Bioinformatics Technology Lab of the Genome Sciences Centre

    HTML Updated Jul 27, 2018
  • The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.

    C++ 9 2 Updated Jul 24, 2018
  • β›“ Correct misassemblies using linked reads

    Python 23 4 GPL-3.0 Updated Jul 20, 2018
  • de novo targeted gene assembly

    Shell 14 3 Updated Jul 19, 2018
  • This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa

    Jupyter Notebook Updated Jul 16, 2018
  • Nanopore sequence read simulator

    Python 27 14 Updated Jul 11, 2018
  • Post Assembly Variants Finder

    Python 1 Updated Jul 5, 2018
  • Targeted ASsembly on the Cloud

    Python Updated Jul 3, 2018
  • 🌺 fast and memory-efficient de novo assembler for bulk and single cell RNA-seq data

    Java 1 Updated Jul 1, 2018
  • Scaffold genome assemblies with 10x Genomics Chromium reads

    C++ 7 2 Updated Jun 27, 2018
  • ntHash: recursive nucleotide hashing

    C++ 21 2 MIT Updated Jun 16, 2018
  • ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads

    HTML 10 1 MIT Updated Jun 14, 2018
  • RAILS and Cobbler

    Perl 6 4 GPL-3.0 Updated Jun 8, 2018
  • Estimating k-mer coverage histogram of genomics data

    C++ 33 2 MIT Updated May 17, 2018
  • 🍻🐧 Core formulae for the Linuxbrew package manager

    Ruby 128 BSD-2-Clause Updated May 3, 2018
  • GraphViz scripts

    Shell Updated Apr 13, 2018
  • Finding putative exons and constructing splicegraphs using Trans-ABySS contigs

    C++ 5 1 Updated Mar 15, 2018
  • command line interface for ggplot

    Python Updated Feb 27, 2018
  • de novo assembly of RNA-seq data using ABySS

    Python 11 3 Updated Feb 19, 2018
  • Python Updated Nov 25, 2017
  • A pipeline for running rsem analysis on thousands of samples

    Python 1 1 Updated Sep 21, 2017
  • 🍼 Assemble the Genome in a Bottle sequencing data

    Makefile 6 Updated Aug 4, 2017