Running: arcs 1.0.0
 pid 38810
 -f k71.fasta
 -a bam.fof
 -s 98
 -c 5
 -l 0
 -z 500
 -b k71.fasta.scaff_s98_c5_l0_d0_e30000_r0.05
 Min index multiplicity: 50
 Max index multiplicity: 1000
 -d 0
 -e 30000
 -r 0.05
 -i 16
 -v 1

=>Getting scaffold sizes... Tue Feb  7 09:50:23 2017
Saw 2421579 sequences.

=>Starting to read BAM files... Tue Feb  7 09:50:33 2017
Reading bam /lustre/scratch117/sciops/team117/hpag/fg6/analysis/10Xg/Anopheles/arcs/hiseq_lane008/bwa/merged.sortedbyname.bam
On line 10000000
On line 20000000
On line 30000000
On line 40000000
On line 50000000
On line 60000000
On line 70000000
On line 80000000
On line 90000000
On line 100000000
On line 110000000
On line 120000000
On line 130000000
On line 140000000
On line 150000000
On line 160000000
On line 170000000
On line 180000000
On line 190000000
On line 200000000
On line 210000000
On line 220000000
On line 230000000
On line 240000000
On line 250000000
On line 260000000
On line 270000000
On line 280000000
On line 290000000
On line 300000000

=>Starting pairing of scaffolds... Tue Feb  7 10:29:56 2017

=>Starting to create graph... Tue Feb  7 10:29:56 2017

=>Starting to write graph file... Tue Feb  7 10:29:56 2017

      Max Degree (-d) set to: 0. Will not delete any verticies from graph.
      Writting graph file to k71.fasta.scaff_s98_c5_l0_d0_e30000_r0.05_original.gv...

=>Done. Tue Feb  7 10:29:56 2017