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ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected)
#345
opened Dec 14, 2022 by
min-codes
snakemake.exceptions.WorkflowError: Config file is not valid JSON or YAML
bug
documentation
question
#335
opened Oct 14, 2022 by
mattdoug604
Add compression step to MAVIS snakemake v3
enhancement
performance
To do with improving speed or resource usage
Integration information from fusion calls with transcriptomic data
enhancement
#322
opened Mar 8, 2022 by
zhemingfan
Straglr conversion support to json for MAVIS annotation
enhancement
long read support
Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
SV caller
Tickets related to support for inputs from different SV callers
Modify DGV annotations to more general tab format to support complex SVs
enhancement
long read support
Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
reference files
To do with generating the reference input files
Add local assembly support for breakpoint validation in Nanopore inputs
enhancement
long read support
Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
Test using pyfaidx instead of Biopython for loading reference FASTA files
enhancement
performance
To do with improving speed or resource usage
#295
opened Jan 21, 2022 by
creisle
Viral integration
awaiting reply
waiting for reply from the reporter
question
#259
opened Oct 13, 2021 by
oghzzang
TypeError: __init__() missing 1 required positional argument: 'args'
awaiting reply
waiting for reply from the reporter
bug
#258
opened Sep 29, 2021 by
imsarath
Figures not being drawn for most chromosomes and missing annotation information
awaiting reply
waiting for reply from the reporter
#229
opened Oct 28, 2020 by
moldach
Add support for long-read bams (genome)
enhancement
long read support
Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
#210
opened May 27, 2020 by
oneillkza
Add support for svim and sniffles vcf as input
enhancement
long read support
Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
#208
opened May 15, 2020 by
oneillkza
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