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Issues list

Add compression step to MAVIS snakemake v3 enhancement performance To do with improving speed or resource usage
#323 opened Apr 6, 2022 by creisle v3.1.0
Straglr conversion support to json for MAVIS annotation enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio SV caller Tickets related to support for inputs from different SV callers
#317 opened Mar 2, 2022 by sarahdada v3.1.0
Modify DGV annotations to more general tab format to support complex SVs enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio reference files To do with generating the reference input files
#307 opened Feb 9, 2022 by zhemingfan
4 tasks
v3.1.0
Add local assembly support for breakpoint validation in Nanopore inputs enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
#305 opened Feb 3, 2022 by zhemingfan
1 of 4 tasks
v3.1.0
Test using pyfaidx instead of Biopython for loading reference FASTA files enhancement performance To do with improving speed or resource usage
#295 opened Jan 21, 2022 by creisle
Viral integration awaiting reply waiting for reply from the reporter question
#259 opened Oct 13, 2021 by oghzzang
Use bare asserts in tests refactor
#219 opened Jul 2, 2020 by creisle
Add support for long-read bams (genome) enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
#210 opened May 27, 2020 by oneillkza
Add support for svim and sniffles vcf as input enhancement long read support Support for long read sequence data, e.g. from Oxford Nanopore or PacBio
#208 opened May 15, 2020 by oneillkza
ProTip! Exclude everything labeled bug with -label:bug.