{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":653869475,"defaultBranch":"main","name":"ntSynt","ownerLogin":"bcgsc","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-06-14T23:25:45.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/2319317?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1714424831.0","currentOid":""},"activityList":{"items":[{"before":"462cd9322ad3614ab2737a63ea9eb1f2eed36dc0","after":null,"ref":"refs/heads/release_1.0.1","pushedAt":"2024-04-29T20:48:29.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"b1dc0ee2f1f7ff41cf4d32595125b1390b9cebc8","after":"c6af9968c73e423f3c4ce41961ecf1a211de371c","ref":"refs/heads/main","pushedAt":"2024-04-29T20:48:27.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Prepare for release v1.0.1 (#41)","shortMessageHtmlLink":"Prepare for release v1.0.1 (#41)"}},{"before":null,"after":"462cd9322ad3614ab2737a63ea9eb1f2eed36dc0","ref":"refs/heads/release_1.0.1","pushedAt":"2024-04-29T19:45:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Prepare for release v1.0.1","shortMessageHtmlLink":"Prepare for release v1.0.1"}},{"before":null,"after":"b2753ba05805f453c42b862c235a9d2569371b60","ref":"refs/heads/chrom_sorting","pushedAt":"2024-04-09T16:00:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add logic for sorting chromosomes","shortMessageHtmlLink":"Add logic for sorting chromosomes"}},{"before":"f852034bed32b2ffc11c46a996233c3c9cdc270d","after":null,"ref":"refs/heads/fix_gggenomes","pushedAt":"2024-03-28T23:17:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"8ee2a656182cb19f6690f1b72f7a31195407bea3","after":"b1dc0ee2f1f7ff41cf4d32595125b1390b9cebc8","ref":"refs/heads/main","pushedAt":"2024-03-28T23:17:50.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Fixes for gggenomes visualization scripts (#40)\n\n* Fix sort order of gggenomes ribbon plots\r\n\r\n* Ensure we retain the input sequence order so that links work properly\r\n\r\n* Fix sort_ntsynt_blocks.py for when the FAI files are not in the current working directory","shortMessageHtmlLink":"Fixes for gggenomes visualization scripts (#40)"}},{"before":"37a37feccccdd7d7f7c440e25c25cbcabb1b0b3d","after":"f852034bed32b2ffc11c46a996233c3c9cdc270d","ref":"refs/heads/fix_gggenomes","pushedAt":"2024-03-28T23:01:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Fix sort_ntsynt_blocks.py for when the FAI files are not in the current working directory","shortMessageHtmlLink":"Fix sort_ntsynt_blocks.py for when the FAI files are not in the curre…"}},{"before":null,"after":"37a37feccccdd7d7f7c440e25c25cbcabb1b0b3d","ref":"refs/heads/fix_gggenomes","pushedAt":"2024-03-28T22:35:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Fix sort order of gggenomes ribbon plots\n\n* Ensure we retain the input sequence order so that links work properly","shortMessageHtmlLink":"Fix sort order of gggenomes ribbon plots"}},{"before":"ae7c9cd5b3017663a83623ab136be4cdfc1c3f08","after":null,"ref":"refs/heads/documentation_updtes","pushedAt":"2024-03-28T22:01:31.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"4960569321fd3dafa9d26eb14162b2671413a2db","after":"8ee2a656182cb19f6690f1b72f7a31195407bea3","ref":"refs/heads/main","pushedAt":"2024-03-28T22:01:28.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update README.md - tip for estimating sequence divergences (#39)","shortMessageHtmlLink":"Update README.md - tip for estimating sequence divergences (#39)"}},{"before":null,"after":"ae7c9cd5b3017663a83623ab136be4cdfc1c3f08","ref":"refs/heads/documentation_updtes","pushedAt":"2024-03-28T21:25:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update README.md - tip for estimating sequence divergences","shortMessageHtmlLink":"Update README.md - tip for estimating sequence divergences"}},{"before":"f279d5258153e9ff4d00458991995798b087be2d","after":null,"ref":"refs/heads/file_of_files","pushedAt":"2024-03-28T20:20:32.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"c8443f68310b0878f4d48cd9b31198182139a8f3","after":"4960569321fd3dafa9d26eb14162b2671413a2db","ref":"refs/heads/main","pushedAt":"2024-03-28T20:20:30.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add --fastas_list to ntSynt (#38)\n\n* Add --fastas_list to ntSynt - allows for the genome files to be supplied in a file (one file per line)\r\n\r\n* Add --fastas_list test\r\n* Update README.md\r\n\r\n* Update ntSynt - function comment","shortMessageHtmlLink":"Add --fastas_list to ntSynt (#38)"}},{"before":"b6830c6e7ce804098cbc30977952bfbbead5c467","after":"f279d5258153e9ff4d00458991995798b087be2d","ref":"refs/heads/file_of_files","pushedAt":"2024-03-28T20:13:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update ntSynt - function comment","shortMessageHtmlLink":"Update ntSynt - function comment"}},{"before":null,"after":"b6830c6e7ce804098cbc30977952bfbbead5c467","ref":"refs/heads/file_of_files","pushedAt":"2024-03-28T20:10:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add --fastas_list to ntSynt - allows for the genome files to be supplied in a file (one file per line)\n\n* Add --fastas_list test\n* Update README.md","shortMessageHtmlLink":"Add --fastas_list to ntSynt - allows for the genome files to be suppl…"}},{"before":"4612c1890fd5a9965a5a568dad23a66fa0797995","after":null,"ref":"refs/heads/update_btllib","pushedAt":"2024-03-21T20:58:32.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"b56b7a7858d611157be4d4f28fd1e8f681011b40","after":"c8443f68310b0878f4d48cd9b31198182139a8f3","ref":"refs/heads/main","pushedAt":"2024-03-21T20:58:30.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update btllib (#37)\n\n* Update btllib dependency\r\n\r\n* Update README.md","shortMessageHtmlLink":"Update btllib (#37)"}},{"before":"576827887510f5c9ea12452c699f240ae3d1f993","after":"4612c1890fd5a9965a5a568dad23a66fa0797995","ref":"refs/heads/update_btllib","pushedAt":"2024-03-21T20:47:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":null,"after":"576827887510f5c9ea12452c699f240ae3d1f993","ref":"refs/heads/update_btllib","pushedAt":"2024-03-21T20:45:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update btllib dependency","shortMessageHtmlLink":"Update btllib dependency"}},{"before":"6c58b89cdf85c4e30089f2908ed6af1855595228","after":null,"ref":"refs/heads/update_analysis_scripts","pushedAt":"2024-02-21T19:57:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"516b8e07e86e17cd67eb35e70aded406f211a69c","after":"b56b7a7858d611157be4d4f28fd1e8f681011b40","ref":"refs/heads/main","pushedAt":"2024-02-21T19:57:48.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update analysis scripts (#35)\n\n* Add coverage of min size genome to denovo_synteny_block_stats.py\r\n\r\n* Add conda badge\r\n\r\n* Update conda badge","shortMessageHtmlLink":"Update analysis scripts (#35)"}},{"before":"29d6361791214f32a779ee6895eb7f345fb8b333","after":"6c58b89cdf85c4e30089f2908ed6af1855595228","ref":"refs/heads/update_analysis_scripts","pushedAt":"2024-02-21T19:44:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update conda badge","shortMessageHtmlLink":"Update conda badge"}},{"before":"5e3904e3e88e8fc0d512092341755e4cdca55d49","after":"29d6361791214f32a779ee6895eb7f345fb8b333","ref":"refs/heads/update_analysis_scripts","pushedAt":"2024-02-21T19:43:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add conda badge","shortMessageHtmlLink":"Add conda badge"}},{"before":null,"after":"5e3904e3e88e8fc0d512092341755e4cdca55d49","ref":"refs/heads/update_analysis_scripts","pushedAt":"2024-02-21T19:41:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add coverage of min size genome to denovo_synteny_block_stats.py","shortMessageHtmlLink":"Add coverage of min size genome to denovo_synteny_block_stats.py"}},{"before":"949d9b34d66f75481fd6c7aa98ad583815eaf29d","after":null,"ref":"refs/heads/add_biorxiv","pushedAt":"2024-02-09T17:22:43.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"3901d8e04dbe507dda47e9dd9361fb4a045f293c","after":"516b8e07e86e17cd67eb35e70aded406f211a69c","ref":"refs/heads/main","pushedAt":"2024-02-09T17:22:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add biorxiv citation (#34)","shortMessageHtmlLink":"Add biorxiv citation (#34)"}},{"before":null,"after":"949d9b34d66f75481fd6c7aa98ad583815eaf29d","ref":"refs/heads/add_biorxiv","pushedAt":"2024-02-09T17:02:33.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Add biorxiv citation","shortMessageHtmlLink":"Add biorxiv citation"}},{"before":"9ce5c2407d78df8bae4d7ab831e5395e525690dc","after":null,"ref":"refs/heads/conda_install","pushedAt":"2024-02-08T23:37:22.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"}},{"before":"7eb1add9a611602252a74d6a6ce80d0af90019cf","after":"3901d8e04dbe507dda47e9dd9361fb4a045f293c","ref":"refs/heads/main","pushedAt":"2024-02-08T23:37:19.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update README.md with conda install instructions (#33)\n\n* Update README.md with conda install instructions\r\n\r\n* Update README.md","shortMessageHtmlLink":"Update README.md with conda install instructions (#33)"}},{"before":"9a555e87ca9c20ab32542c01feae51a6bd16305a","after":"9ce5c2407d78df8bae4d7ab831e5395e525690dc","ref":"refs/heads/conda_install","pushedAt":"2024-02-08T22:40:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lcoombe","name":"Lauren Coombe","path":"/lcoombe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11697335?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEPWDq4wA","startCursor":null,"endCursor":null}},"title":"Activity · bcgsc/ntSynt"}