From ec57ec771966210b4c20b6eff45d62b89474f7ce Mon Sep 17 00:00:00 2001 From: Caralyn Reisle Date: Thu, 15 Apr 2021 15:42:51 -0700 Subject: [PATCH 1/4] Add link to main PORI repo --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index f6b756d..66c0778 100644 --- a/README.md +++ b/README.md @@ -2,6 +2,8 @@ [![codecov](https://codecov.io/gh/bcgsc/pori_graphkb_schema/branch/master/graph/badge.svg?token=0QZTY7RA1R)](https://codecov.io/gh/bcgsc/pori_graphkb_schema) ![build](https://github.com/bcgsc/pori_graphkb_schema/workflows/build/badge.svg?branch=master) [![npm version](https://badge.fury.io/js/%40bcgsc-pori%2Fgraphkb-schema.svg)](https://badge.fury.io/js/%40bcgsc-pori%2Fgraphkb-schema) ![node versions](https://img.shields.io/badge/node-10%20%7C%2012%20%7C%2014-blue) +This repository is part of the [platform for oncogenomic reporting and interpretation](https://github.com/bcgsc/pori). + This is the package which defines the schema logic used to create the database, build the API and GUI. It is a dependency of both the API and GUI and uses the parser package. From b8b8cce820bc3593bad727c89d72b177e57f10c4 Mon Sep 17 00:00:00 2001 From: Caralyn Reisle Date: Fri, 23 Apr 2021 11:40:14 -0700 Subject: [PATCH 2/4] Add support for five-prime cds mutations Relates to: bcgsc/pori_graphkb_parser#5 --- package-lock.json | 24 ++++++++++++------------ src/schema/position.js | 2 +- 2 files changed, 13 insertions(+), 13 deletions(-) diff --git a/package-lock.json b/package-lock.json index 320bcc8..8220b5d 100644 --- a/package-lock.json +++ b/package-lock.json @@ -2294,9 +2294,9 @@ } }, "lodash": { - "version": "4.17.15", - "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.15.tgz", - "integrity": "sha512-8xOcRHvCjnocdS5cpwXQXVzmmh5e5+saE2QGoeQmbKmRS6J3VQppPOIt0MnmE+4xlZoumy0GPG0D0MVIQbNA1A==", + "version": "4.17.21", + "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.21.tgz", + "integrity": "sha512-v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg==", "dev": true }, "semver": { @@ -9305,9 +9305,9 @@ } }, "lodash": { - "version": "4.17.14", - "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.14.tgz", - "integrity": "sha512-mmKYbW3GLuJeX+iGP+Y7Gp1AiGHGbXHCOh/jZmrawMmsE7MS4znI3RL2FsjbqOyMayHInjOeykW7PEajUk1/xw==", + "version": "4.17.21", + "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.21.tgz", + "integrity": "sha512-v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg==", "dev": true }, "lodash.omit": { @@ -10189,9 +10189,9 @@ }, "dependencies": { "lodash": { - "version": "4.17.15", - "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.15.tgz", - "integrity": "sha512-8xOcRHvCjnocdS5cpwXQXVzmmh5e5+saE2QGoeQmbKmRS6J3VQppPOIt0MnmE+4xlZoumy0GPG0D0MVIQbNA1A==", + "version": "4.17.21", + "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.21.tgz", + "integrity": "sha512-v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg==", "dev": true } } @@ -11780,9 +11780,9 @@ "dev": true }, "y18n": { - "version": "4.0.0", - "resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.0.tgz", - "integrity": "sha512-r9S/ZyXu/Xu9q1tYlpsLIsa3EeLXXk0VwlxqTcFRfg9EhMW+17kbt9G0NrgCmhGb5vT2hyhJZLfDGx+7+5Uj/w==", + "version": "4.0.3", + "resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.3.tgz", + "integrity": "sha512-JKhqTOwSrqNA1NY5lSztJ1GrBiUodLMmIZuLiDaMRJ+itFd+ABVE8XBjOvIWL+rSqNDC74LCSFmlb/U4UZ4hJQ==", "dev": true }, "yargs": { diff --git a/src/schema/position.js b/src/schema/position.js index e07814c..f5e4214 100644 --- a/src/schema/position.js +++ b/src/schema/position.js @@ -77,7 +77,7 @@ module.exports = { embedded: true, properties: [ { - name: 'pos', type: 'integer', min: 1, mandatory: true, example: 55, nullable: true, + name: 'pos', type: 'integer', mandatory: true, example: 55, nullable: true, }, { name: 'offset', type: 'integer', example: -11 }, ], From 06b53eecf4d27c586f3cccb74fe4a60c3795077d Mon Sep 17 00:00:00 2001 From: Caralyn Reisle Date: Mon, 26 Apr 2021 16:43:54 -0700 Subject: [PATCH 3/4] Require parser 1.1.2 or higher --- package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package.json b/package.json index fa09aec..3d8f620 100644 --- a/package.json +++ b/package.json @@ -17,7 +17,7 @@ "author": "", "license": "GPL-3.0", "peerDependencies": { - "@bcgsc-pori/graphkb-parser": ">=1.0.0 <2.0.0" + "@bcgsc-pori/graphkb-parser": ">=1.1.2 <2.0.0" }, "dependencies": { "isemail": "^3.2.0", From 0dec4999efef019332b855840f140187c6efc114 Mon Sep 17 00:00:00 2001 From: Caralyn Reisle Date: Mon, 26 Apr 2021 17:02:33 -0700 Subject: [PATCH 4/4] Bump version to 3.15.0 --- package-lock.json | 2 +- package.json | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/package-lock.json b/package-lock.json index b5f8110..12ff71a 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,6 +1,6 @@ { "name": "@bcgsc-pori/graphkb-schema", - "version": "3.14.3", + "version": "3.15.0", "lockfileVersion": 1, "requires": true, "dependencies": { diff --git a/package.json b/package.json index 6fc6565..d825cf6 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "@bcgsc-pori/graphkb-schema", - "version": "3.14.3", + "version": "3.15.0", "description": "Shared package between the API and GUI for GraphKB which holds the schema definitions and schema-related functions", "bugs": { "email": "graphkb@bcgsc.ca"