error handling

Included error handling when scaling isn't sufficient to keep genomic features within plot bounds

README.md

@@ -2,18 +2,17 @@
 [![Downloads](https://img.shields.io/github/downloads/bcgsc/xmatchview/total?logo=github)](https://github.com/bcgsc/xmatchview/releases/download/v1.2.0/xmatchview_1-2.tar)
 [![Conda](https://img.shields.io/conda/dn/bioconda/xmatchview?label=Conda)](https://anaconda.org/bioconda/xmatchview)
 [![Issues](https://img.shields.io/github/issues/bcgsc/xmatchview.svg)](https://github.com/bcgsc/xmatchview/issues)
-Thank you for your [![Stars](https://img.shields.io/github/stars/bcgsc/xmatchview.svg)](https://github.com/bcgsc/xmatchview/stargazers)
 
 ![Logo](https://github.com/warrenlr/xmatchview/blob/master/xmv-logo.png)
 
 # xmatchview
 ## Genome alignment visualization
-## xmatchview v1.2.3 Rene L. Warren, 2005-2020
+## xmatchview v1.2.4 Rene L. Warren, 2005-2020
 ## email: rwarren [at] bcgsc [dot] ca
 
 ### NAME
    <pre>
-   xmatchview.py, xmatchview-hive.py, xmatchview-conifer.py v1.2.3  April 2020
+   xmatchview.py, xmatchview-hive.py, xmatchview-conifer.py v1.2.4  April/October 2020
    xmatchview-hive.pl v1.2.2 February 2020
    xmatchview.py v1.2.0	October 2019
    xmatchview.py v1.1.1   December 2018
@@ -25,7 +24,7 @@ Thank you for your [![Stars](https://img.shields.io/github/stars/bcgsc/xmatchvie
    </pre>
 
 ### SYNOPSIS
-   xmatchview, xmatchview-conifer and xmatchview-hive are imaging tools for visualizing DNA sequence synteny. It allows users to align 2 (or 3) DNA sequences in FASTA format using cross_match, minimap2 or any aligners with .paf output capabilities, and displays the alignments in a variety of image formats (png, tiff). xmatchview-hive outputs xml-scalable vector graphics (svg)
+   xmatchview, xmatchview-conifer and xmatchview-hive are imaging tools for visualizing DNA/RNA sequence synteny. It allows users to align 2 (or 3) sequences in FASTA format using cross_match, minimap2 or any aligners with .paf output capabilities, and displays the alignments in a variety of image formats (png, tiff). xmatchview-hive outputs xml-scalable vector graphics (svg)
 
 ## xmatchview
 ![Logo](https://github.com/warrenlr/xmatchview/blob/master/xmv.png)
@@ -74,7 +73,7 @@ I encourage the community to contribute to the development of this software, by
 Download the tar file and extract the files on your system using:
 
 <pre>
-tar -xvf xmatchview_1-2-3.tar 
+tar -xvf xmatchview_1-2-4.tar 
 </pre>
 
 ### DEPENDENCIES
@@ -109,7 +108,7 @@ You will need to do the following before you can proceed:
 ### USAGE 
 ---------------
 <pre>
-Usage: ['./xmatchview.py'] v1.2.3
+Usage: ['./xmatchview.py'] v1.2.4
 -x alignment file (cross_match .rep or Pairwise mApping Format .paf) 
 -s reference genome fasta file
 -q query contig/genome fasta file
@@ -124,7 +123,7 @@ Usage: ['./xmatchview.py'] v1.2.3
 -p full path to the directory with fonts on your system (please refer to the documentation for fonts used)
 * Files for the -s and -q options must correspond to fasta files used to run cross_match
 
-Usage: ['./xmatchview-conifer.py'] v1.2.3
+Usage: ['./xmatchview-conifer.py'] v1.2.4
 -x alignment file (cross_match .rep or Pairwise mApping Format .paf) 
 -s reference genome fasta file
 -q query contig/genome fasta file
@@ -139,7 +138,7 @@ Usage: ['./xmatchview-conifer.py'] v1.2.3
 -p full path to the directory with fonts on your system (please refer to the documentation for fonts used)
 * Files for the -s and -q options must correspond to fasta files used to run cross_match
 
-Usage: ['./xmatchview-hive.py'] v1.2.3
+Usage: ['./xmatchview-hive.py'] v1.2.4
 -x alignment file [1 vs. 2] (cross_match .rep or Pairwise mApping Format .paf)
 -y alignment file [1 vs. 3] (cross_match .rep or Pairwise mApping Format .paf)
 -z alignment file [3 vs. 2] (cross_match .rep or Pairwise mApping Format .paf)
@@ -310,6 +309,12 @@ Krzywinski M, Birol I, Jones S, Marra M (2011). Hive Plots — Rational Approach
 </pre>
 
 
+### WHAT'S NEW in v1.2.4
+------------------
+<pre>
+-Included error handling when scaling isn't sufficient to keep genomic features within plot bounds
+</pre>
+
 ### WHAT'S NEW in v1.2.3
 ------------------
 <pre>