User-friendly biodiversity data cleaning pipeline
bdclean will provide features to manage complete pipeline for biodiversity data cleaning.
A modular approach to plug in data checking and cleaning functions would make this package
one stop shop for many biodiversity data cleaning needs.
Development version, from GitHub
Download some data from GBIF
occdat <- occ_data( country = "AU", # Country code for australia classKey= 359, # Class code for mammalia limit = 5000, # Get only 5000 records )
Taking just the species occurrence dataframe
myData <- occdat$data
Getting your input: generating input questions and saving your answers
myConfig <- get_config()
Cleaning your data based on your answers
cleanData <- clean_data(myData, myConfig)
Cleaning reports should be created in
bdclean is still under development, a CRAN release with many package upgrades is expected in July 2018.
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