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@ayresdl ayresdl released this Dec 3, 2018 · 23 commits to master since this release

Bug fixes:

  • Further fixes to pthread linking problems for Linux compilation under GCC;
  • Fixed issue with odd state counts and CPU SSE;
  • Fixed issue with non nucleotide state counts on AMD GPUs;
  • Adjustments to CPU auto-threading heuristics.
Assets 2

@ayresdl ayresdl released this Nov 16, 2018 · 36 commits to master since this release

Bug Fixes:

  • Fixed pthread linking issue on Linux which prevented some programs from loading CPU plugin.
  • Fixed issue with multi-partition mode and unrooted trees on CPU implementation (multi-partition on CPU typically only used for debugging)
Assets 2
  • v3.1.0
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  • v3.1.0
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@ayresdl ayresdl released this Nov 11, 2018 · 45 commits to master since this release

New Features:

  • Automatic resource selection via beagleGetBenchmarkedResourceList.
  • Control of CPU threading with beagleSetCPUThreadCount.

Performance and bug Fixes:

  • CPU implementation now defaults to non-threaded implementation to replicate behaviour of previous versions.
  • Improved CPU auto-threading to use fewer threads for better performance in some scenarios.
  • Improved performance for CUDA implementation when rescaling (improved synchonization of streams).
Assets 4

@ayresdl ayresdl released this Jun 14, 2018 · 114 commits to master since this release

Bug fixes:

  • Fixed macOS installer to place BEAGLE JNI library in correct location
  • Removed OpenCL implementation from macOS build and installer, as OpenCL is being deprecated by Apple
Assets 3
May 14, 2018
correcting pre-3.0 tag

@ayresdl ayresdl released this May 11, 2018 · 129 commits to master since this release

Bug Fixes:

  • Fixed issue with GPU implementation (undersized array allocation).
Assets 4

@ayresdl ayresdl released this Apr 25, 2018 · 140 commits to master since this release

New Features:

  • Improved performance for partitioned data sets.
  • Improved performance for large trees with short alignments.
  • Improved performance for default CPU implementation, via use of threading.

Bug Fixes:

  • Several minor fixes.
Assets 4
Pre-release

@ayresdl ayresdl released this Apr 20, 2018 · 173 commits to master since this release

Update README.md

fixed broken API documentation link
Assets 2
Feb 10, 2014
tagging release v2.1.2
Feb 8, 2014
tagging release v2.1.1
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