"Galaxy Training Materials: Community creation, curation, and use" @GalaxyAdmins Meetup
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README.md

GalaxyAdmins Meetup: "Galaxy Training Materials: Community creation, curation, and use"

Requirements

  • R

Installation

  • Get the repository content

    $ git clone https://github.com/bebatut-slides/galaxy_admin_meetup_12_16.git
    $ git submodule init
    $ git submodule update
    
  • Download PhantomJS executable following Decktape instructions

    $ cd decktape
    # Windows (MSVC 2013), 64-bit, for Windows Vista or later, bundles VC++ Runtime 2013
    $ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-msvc2013-win64.exe -o bin\phantomjs.exe
    # Mac OS X (Cocoa), 64-bit, for OS X 10.6 or later
    $ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-osx-cocoa-x86-64 -o bin/phantomjs
    # Linux (CentOS 6), 64-bit
    $ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-linux-centos6-x86-64 -o bin/phantomjs
    # Linux (CentOS 7), 64-bit
    $ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-linux-centos7-x86-64 -o bin/phantomjs
    # Linux (Debian 8), 64-bit
    $ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-linux-debian8-x86-64 -o bin/phantomjs
    
  • Change permissions

    $ chmod +x bin/phantomjs
    $ cd ../
    

Usage

To manipulate the training statistics and generate corresponding plots,

  1. Launch R
  2. Run source("src/manipulate_training_stats.R")

To generate PDF file corresponding to HTML files, run:

$ ./build.sh