Slides for a workshop on tool integration in Galaxy environment
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README.md

Workshop on tool integration in Galaxy environment

Install

$ git clone https://github.com/bebatut-slides/galaxy_workshop_05_16.git
$ git submodule init
$ git submodule update
$ git clone https://github.com/astefanutti/decktape/
$ cd decktape

Download PhantomJS executable following Decktape instructions

# Windows (MSVC 2013), 64-bit, for Windows Vista or later, bundles VC++ Runtime 2013
$ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-msvc2013-win64.exe -o bin\phantomjs.exe
# Mac OS X (Cocoa), 64-bit, for OS X 10.6 or later
$ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-osx-cocoa-x86-64 -o bin/phantomjs
# Linux (CentOS 6), 64-bit
$ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-linux-centos6-x86-64 -o bin/phantomjs
# Linux (CentOS 7), 64-bit
$ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-linux-centos7-x86-64 -o bin/phantomjs
# Linux (Debian 8), 64-bit
$ curl -L http://astefanutti.github.io/decktape/downloads/phantomjs-linux-debian8-x86-64 -o bin/phantomjs

Change permissions

$ chmod +x bin/phantomjs
$ cd ../

Usage

To generate PDF file corresponding to HTML files, run:

$ ./build.sh