bedrock-bio

Open-Access Computational Biology Datasets

Description

Efficiently access a curated library of open-access computational biology datasets. Datasets support predicate pushdown and projection to the cloud storage backend, enabling quick, iterative access to otherwise massive, unwieldy datasets.

Usage

This repository holds the client libraries for Bedrock Bio data:

• r/ — R client package (CRAN)
• python/ — Python client package (PyPI)

The MCP server for LLM clients lives in its own repo, bedrock-bio-mcp (hosted at https://mcp.bedrock.bio/mcp). Both clients read the same manifest.json catalog.

See bedrock.bio for the dataset catalog, usage, and guidance on choosing an access method.

Dataset Requests

To request the addition of a new dataset to the library, open an issue.