GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environm…
Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology
Ananke: Clustering marker gene data by time-series patterns
Tool to predict the presence of antimicrobial resistance in clinical metagenomes
High-throughput analysis of targeted microsatellite sequences.
A visual analytics tool to investigate correlated data structures using heatmaps, networks, and network statistics.
To extract AMR genes and their neighborhood
AMR/VF LGT focused bacterial genomics analysis workflow
R package for CCM (Community Coevolution Model)
RAD reports from the Beiko lab students
A software pipeline to simplify the analysis and visualization of gene neighborhoods.
QUOREM: Query, Unify, and Organize Research on the Ecology of Microorganisms
Collation of useful training materials
A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.