- jobTree 20 Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-c…
- cactus 16 Genome aligner based upon notion of Cactus graphs
- marginAlign 13 UCSC Nanopore
- sonLib 9 Small general purpose library for C and Python with focus on bioinformatics.
- assemblaScripts 4 Benchmarking scripts for assessing assemblies, used in the Assemblathon 1 project