Probabilistic consistency based aligner
Java Python
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bp Fix Apr 25, 2011
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README.md Updated documentation Oct 21, 2011
__init__.py Added MIT license Feb 2, 2011

README.md

Installing pecan.

(1) Install Exonerate by Guy Slater

(2) Build the code: Do 'javac bp/pecan/Pecan.java' and 'javac bp/trawler/Trawler.java'

(3) (optional) Add the directory pecan to your class path. For example: CLASSPATH=foo/pecan/

(4) Test the installation by running pecan, for example: java -cp {path to pecan dir} bp.pecan.Pecan (if you didn't set the class path) or: java bp.pecan.Pecan

See https://github.com/benedictpaten/ for different projects.

For usage instructions see doc/