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to quality trim, bin by MP/PE/Unkn, align to ref, estimate insert size.
Assess the results of a genome assembly through various metrics (e.g. N50, total length, BUSCO)
used as a pipeline to quality trim, then collapse overlapping reads (e.g. paired-end where insert size is less than the length of R1 + R2)
A simple repo to go from raw illumina single-end read data to counts
Used to map trimmed reads against a genome, subset for those mapping to specific contig/scaffold and prepare for assembly