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Popular repositories

  1. mate-pair_QC

    to quality trim, bin by MP/PE/Unkn, align to ref, estimate insert size.

    Shell 2

  2. assembly_metrics

    Assess the results of a genome assembly through various metrics (e.g. N50, total length, BUSCO)

    Shell 2

  3. scripts

    Various scripts

    Shell 1

  4. overlappingReads

    used as a pipeline to quality trim, then collapse overlapping reads (e.g. paired-end where insert size is less than the length of R1 + R2)

    Shell 1

  5. Simple_reads_to_counts

    A simple repo to go from raw illumina single-end read data to counts

    Shell 1

  6. genomeSubsetAssemble

    Used to map trimmed reads against a genome, subset for those mapping to specific contig/scaffold and prepare for assembly


186 contributions in the last year

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Contribution activity

July - August 2018

bensutherland has no activity yet for this period.

June 2018

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