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  • University of British Columbia and Fisheries and Oceans Canada
  • Nanaimo, British Columbia, Canada

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Popular repositories

  1. Assess the results of a genome assembly through various metrics (e.g. N50, total length, BUSCO)

    Shell 2

  2. A simple repo to go from raw illumina single-end read data to counts

    Shell 2

  3. to quality trim, bin by MP/PE/Unkn, align to ref, estimate insert size.

    Shell 1

  4. used as a pipeline to quality trim, then collapse overlapping reads (e.g. paired-end where insert size is less than the length of R1 + R2)

    Shell 1

  5. Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)

    R 1 1

  6. Extract a section of a reference genome flanking an input locus with SNPs.

    R 1

332 contributions in the last year

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Contribution activity

July 2020

4 contributions in private repositories Jul 1 – Jul 5

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