From 83adccd2e6cc9eb48314197d189643ba205e672c Mon Sep 17 00:00:00 2001
From: Christina Bergey <christina.bergey@gmail.com>
Date: Thu, 7 Dec 2017 13:40:14 -0500
Subject: [PATCH] Forgot to remove rm command for temp dir.

---
 scripts/remove_dups.sh | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/scripts/remove_dups.sh b/scripts/remove_dups.sh
index e5dc720..109653c 100755
--- a/scripts/remove_dups.sh
+++ b/scripts/remove_dups.sh
@@ -35,9 +35,6 @@ if [ "$MARK_DUPS" = "TRUE" ]; then
         REMOVE_DUPLICATES=false \
         MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=${PICARD_MARK_DUP_MAX_FILES}
 
-    # Delete temp folder
-    rm -r $TMP_DIR
-
 elif [ "$MARK_DUPS" = "FALSE" ]; then
 
     # Otherwise just copy input file to output